Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30631
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 108 6e-25
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 108 6e-25
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 29 0.48
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 28 0.84
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 28 1.1
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 28 1.1
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 28 1.1
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 1.1
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.5
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 1.9
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 1.9
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 26 3.4
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 26 3.4
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 4.5
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 25 5.9
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 7.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 7.8
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 108 bits (259), Expect = 6e-25
Identities = 53/90 (58%), Positives = 67/90 (74%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +D RL +PK++VAAL T+ ARARIL AGGE+LT DQLALRAPTG TVL++G++
Sbjct: 86 GTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKK 145
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
+AREA RHFG P H PYVR++G+K
Sbjct: 146 HAREAYRHFG---FGPHKHKAPYVRSEGRK 172
Score = 64.5 bits (150), Expect = 1e-11
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
IDI H RK +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS
Sbjct: 3 IDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62
Query: 181 VSRLA--RHMKKPTREGLIAVVVGTVT 255
+S++A K + EG V+VGTVT
Sbjct: 63 ISKIAALTSRKSASLEGKTTVIVGTVT 89
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 108 bits (259), Expect = 6e-25
Identities = 52/90 (57%), Positives = 67/90 (74%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +D R+ +PK+++AAL T+ ARARIL AGGE+LT DQLALRAPTG TVLV+G++
Sbjct: 86 GTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKK 145
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
+AREA RHFG P H PYVR++G+K
Sbjct: 146 HAREAYRHFG---FGPHKHKAPYVRSEGRK 172
Score = 60.5 bits (140), Expect = 2e-10
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
IDI H +K +R++ S+++ T+++FN+ +L+RLF S+ NRPPIS
Sbjct: 3 IDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPIS 62
Query: 181 VSRLA--RHMKKPTREGLIAVVVGTVT 255
+S++A K + + VVVGTVT
Sbjct: 63 ISKIAALTSRKSASSQNKTTVVVGTVT 89
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 29.1 bits (62), Expect = 0.48
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 356 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIVTVPT 240
KN+ SS + TS + N+ +S+R +R +QS V + PT
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPT 208
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 28.3 bits (60), Expect = 0.84
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = -2
Query: 518 LLFLSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KN 351
LL +SLGA+ G W RA + C I L+ + + TK + KN
Sbjct: 304 LLGISLGASSG-------KWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKN 355
Query: 350 FSSSSQNACTSFF 312
SS++ AC+SFF
Sbjct: 356 RSSAALLACSSFF 368
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 515 LFLSLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKN 351
LFLS G IG ++ C++ I+++ Y Y LL T S LI +++
Sbjct: 630 LFLSFGITIGSALYGWMDKDATDADTCMSIIAVSPYWYILLIPIFTLSLLIVTQS 684
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 305 MKSSHRHLRYLVQSHVIVTVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRL 153
+K+S HL +Q +++ + P + +++WR + E +IRL
Sbjct: 231 LKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSFNIIRL 281
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 27.9 bits (59), Expect = 1.1
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Frame = -2
Query: 458 SRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLR 279
S AKV +CL S + + S L + SS+ F ++ +S R+
Sbjct: 95 SFAKVINCLRFPSFLINFIFSVYQTSALGFLCLGQYLRSSAMVQAGQSFSHIVASKRN-- 152
Query: 278 YLVQSHVIVTVPTTTAIK-PSRVGFFMWRAKRDTEIGGRLIRLIKS 144
+ H++VT ++ PS VGFF+W +G + L+ S
Sbjct: 153 ---KDHLLVTDGIYAYVRHPSYVGFFIWALGTQMLLGNFVSTLLFS 195
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 258 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 371
D+ Y+IP + + + TE+A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 359 SKNFSSSSQNACTSFFGNMKSSHRH 285
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 1.9
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 337 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 477
LL F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -2
Query: 404 YCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIVTVPTTTA 231
Y + +ST + + S F+ +QN+ + F N +S + + Q++ I PTT+A
Sbjct: 160 YKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQ---QANDIFGAPTTSA 214
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = -1
Query: 327 VHELFR*HEEQPPSSSVSCTVSRHCDCPHYHGNQTLTSWLL 205
VH+ + + E+P S + + H + +G + LT W++
Sbjct: 26 VHQFYWTYTEEPHKSRRAAILKAHPEIASLNGYEPLTKWIV 66
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 397 RQYWYKVSEMLVRQCVTLALLQ--EHRAL-TLNPMFAPRDRKSKAQSS 531
+ +W VS + CV L L+ +HR++ L M P KS SS
Sbjct: 30 KSFWIAVSSSVTTACVILGTLEFRKHRSIRRLQSMIVPEAGKSIQLSS 77
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 4.5
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = -2
Query: 464 SWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRH 285
S S + + TS S + +S S+ S S + SSSS + +S + +SHR
Sbjct: 122 SSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRTTSHRT 181
Query: 284 LRYLVQSHVIVTVPTTT 234
+ S+ P TT
Sbjct: 182 TSHKSSSYRPTVFPYTT 198
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 5.9
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 249 SHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNA 428
+H D L +P + VT R + GG + R+ T ++T+L G RN+
Sbjct: 58 NHLDANLSNVPTINSIPSPVT---RPPVAVGGGIFYGARRTRNRSQTQRRTLLENGFRNS 114
Query: 429 RE 434
R+
Sbjct: 115 RK 116
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 7.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 363 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPA 458
D++ + P G K + Q ++ R A++H+ A
Sbjct: 120 DEILPKEPAGSKEAMQQKKKEKRAALKHYREA 151
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 397 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 486
R +YK SE ++ Q + +LQ+ ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,483
Number of Sequences: 5004
Number of extensions: 49340
Number of successful extensions: 154
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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