Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30631
(570 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 120 5e-27
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 120 5e-27
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 120 5e-27
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 120 5e-27
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 120 5e-27
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 120 5e-27
AK000286-1|BAA91055.1| 308|Homo sapiens protein ( Homo sapiens ... 31 3.8
BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein. 30 6.6
AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 30 6.6
AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K exc... 30 6.6
AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+... 30 6.6
AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein. 30 6.6
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 120 bits (288), Expect = 5e-27
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
RE RHFG APG P SHTKPYVR+KG+K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 97.1 bits (231), Expect = 4e-20
Identities = 48/85 (56%), Positives = 56/85 (65%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
+SR+ R MK P RE AVVVGT+T
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTIT 87
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 120 bits (288), Expect = 5e-27
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 61 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 120
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
RE RHFG APG P SHTKPYVR+KG+K
Sbjct: 121 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 150
Score = 72.5 bits (170), Expect = 9e-13
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = +1
Query: 109 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 255
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVGT+T
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTIT 64
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 120 bits (288), Expect = 5e-27
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
RE RHFG APG P SHTKPYVR+KG+K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 95.1 bits (226), Expect = 2e-19
Identities = 47/85 (55%), Positives = 55/85 (64%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLC 62
Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
+SR+ R MK P RE AVVVGT+T
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTIT 87
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 120 bits (288), Expect = 5e-27
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
RE RHFG APG P SHTKPYVR+KG+K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 97.1 bits (231), Expect = 4e-20
Identities = 48/85 (56%), Positives = 56/85 (65%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
+SR+ R MK P RE AVVVGT+T
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTIT 87
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 120 bits (288), Expect = 5e-27
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
RE RHFG APG P SHTKPYVR+KG+K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 97.1 bits (231), Expect = 4e-20
Identities = 48/85 (56%), Positives = 56/85 (65%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
+SR+ R MK P RE AVVVGT+T
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTIT 87
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 120 bits (288), Expect = 5e-27
Identities = 56/90 (62%), Positives = 68/90 (75%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
RE RHFG APG P SHTKPYVR+KG+K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 97.1 bits (231), Expect = 4e-20
Identities = 48/85 (56%), Positives = 56/85 (65%)
Frame = +1
Query: 1 IDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPIS 180
+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP+S
Sbjct: 3 VDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLS 62
Query: 181 VSRLARHMKKPTREGLIAVVVGTVT 255
+SR+ R MK P RE AVVVGT+T
Sbjct: 63 LSRMIRKMKLPGRENKTAVVVGTIT 87
>AK000286-1|BAA91055.1| 308|Homo sapiens protein ( Homo sapiens
cDNA FLJ20279 fis, clone HEP03229. ).
Length = 308
Score = 30.7 bits (66), Expect = 3.8
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 376 FVLRLARRQYWYKVSEMLVRQCVTLALLQEH-RALTLNPMFAPRDRKSK 519
FV+ L + +WY V ++ C+ + L H R + +P P+ +K
Sbjct: 67 FVMLLPSKDFWYSVVNGVIFNCLAVLALSSHLRTMLTDPGAVPKGNATK 115
>BC117263-1|AAI17264.1| 1069|Homo sapiens SLC24A1 protein protein.
Length = 1069
Score = 29.9 bits (64), Expect = 6.6
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 276 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 455
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 456 AP-GAPRSHTKPYVRTKGQKKQGP 524
P G +S++ VR K + P
Sbjct: 169 TPRGEMKSYSPTQVREKVKYTPSP 192
>AF062922-1|AAC77912.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger protein.
Length = 1099
Score = 29.9 bits (64), Expect = 6.6
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 276 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 455
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 456 AP-GAPRSHTKPYVRTKGQKKQGP 524
P G +S++ VR K + P
Sbjct: 169 TPRGEMKSYSPTQVREKVKYTPSP 192
>AF062921-1|AAC16732.1| 1099|Homo sapiens retinal rod Na-Ca+K
exchanger splice variant protein.
Length = 1099
Score = 29.9 bits (64), Expect = 6.6
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 276 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 455
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 456 AP-GAPRSHTKPYVRTKGQKKQGP 524
P G +S++ VR K + P
Sbjct: 169 TPRGEMKSYSPTQVREKVKYTPSP 192
>AF026132-1|AAB97832.1| 1081|Homo sapiens retinal rod Na+/Ca+, K+
exchanger protein.
Length = 1081
Score = 29.9 bits (64), Expect = 6.6
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 276 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 455
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 114 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 168
Query: 456 AP-GAPRSHTKPYVRTKGQKKQGP 524
P G +S++ VR K + P
Sbjct: 169 TPRGEMKSYSPTQVREKVKYTPSP 192
>AB014602-1|BAA31677.2| 988|Homo sapiens KIAA0702 protein protein.
Length = 988
Score = 29.9 bits (64), Expect = 6.6
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 276 IPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGP 455
+PK T + T K AAG E D PT +T+ ++R+ V+ + P
Sbjct: 117 MPKRTAKMIPTTTKNNYSPTAAGTERRKED-----TPTSSRTLTYYTSTSSRQIVKKYTP 171
Query: 456 AP-GAPRSHTKPYVRTKGQKKQGP 524
P G +S++ VR K + P
Sbjct: 172 TPRGEMKSYSPTQVREKVKYTPSP 195
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,724,590
Number of Sequences: 237096
Number of extensions: 2041691
Number of successful extensions: 4456
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4449
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -