Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30631
(570 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 129 1e-30
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 127 6e-30
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 118 4e-27
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.41
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.54
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 1.7
At1g49920.1 68414.m05598 zinc finger protein-related weak simila... 29 2.2
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 28 3.8
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 3.8
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 3.8
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 3.8
At5g08260.1 68418.m00971 serine carboxypeptidase S10 family prot... 28 5.0
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 5.0
At1g32190.1 68414.m03959 expressed protein 27 6.7
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 8.8
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 8.8
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 129 bits (311), Expect = 1e-30
Identities = 59/90 (65%), Positives = 73/90 (81%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
N+REAV+HFGPAPG P SH+KPYVR KG+K
Sbjct: 143 NSREAVKHFGPAPGVPHSHSKPYVRAKGRK 172
Score = 64.1 bits (149), Expect = 6e-11
Identities = 32/77 (41%), Positives = 47/77 (61%)
Frame = +1
Query: 25 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 204
+K +RT KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 205 KKPTREGLIAVVVGTVT 255
+E IAV+VGT+T
Sbjct: 72 --TGKEDKIAVLVGTIT 86
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 127 bits (306), Expect = 6e-30
Identities = 59/90 (65%), Positives = 73/90 (81%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 422
G +D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142
Query: 423 NAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
N+REAV+HFGPAPG P S+TKPYVR KG+K
Sbjct: 143 NSREAVKHFGPAPGVPHSNTKPYVRHKGRK 172
Score = 59.7 bits (138), Expect = 1e-09
Identities = 29/77 (37%), Positives = 46/77 (59%)
Frame = +1
Query: 25 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 204
+K +RT KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 205 KKPTREGLIAVVVGTVT 255
++ IAV+VGT+T
Sbjct: 72 --TGKDDKIAVLVGTIT 86
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 118 bits (283), Expect = 4e-27
Identities = 57/91 (62%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Frame = +3
Query: 243 GDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-GKKTVLVQGQ 419
G +DVR+ +P +TV AL TE ARARI AGGE LTFDQLAL PT + TVL++G
Sbjct: 30 GTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGP 89
Query: 420 RNAREAVRHFGPAPGAPRSHTKPYVRTKGQK 512
+N REAV+HFGPAPG P SHTKPYVR G+K
Sbjct: 90 KNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120
Score = 40.7 bits (91), Expect = 7e-04
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +1
Query: 151 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTVT 255
MS++N+ P+S+SRL R+M ++G IAV+VGTVT
Sbjct: 1 MSKVNKAPLSLSRLVRYM--DGKDGKIAVIVGTVT 33
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.41
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -1
Query: 453 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 361
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.54
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 296 CSSCYRKSSCTHFGCWRRNSYF 361
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 348 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 440
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At1g49920.1 68414.m05598 zinc finger protein-related weak
similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
mays] GI:1857256; contains Pfam profiles PF03108: MuDR
family transposase, PF04434: SWIM zinc finger
Length = 785
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 249 SHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 371
+H+D R Y I ++ AL K ++ AGG +L F QL
Sbjct: 537 AHDDGRRYGIMRIDTEALFAVCKRFRKVAMAGGVMLLFGQL 577
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 360 FDQLALRAPTGKKTVLVQGQRNAREAV 440
FD L LR P+GK LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 360 FDQLALRAPTGKKTVLVQGQRNAREAV 440
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 260 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 385
R+ + +E GGC+SC KS T C R+ + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 437 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 315
CL S++ TL L +S+ ++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At5g08260.1 68418.m00971 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II chains A and B
(SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)];
carboxypeptidase D - Triticum aestivum, PIR:A29639
Length = 480
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 234 RGSGDSHNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTG 392
+G D++ND+ +Y I + ++ R + +LTFD L + P G
Sbjct: 275 KGFMDAYNDIDIYSIYTPVCLSSLLSSSPRKPKIVVSPRLLTFDDLWDKFPAG 327
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 124 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 231
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 6.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 296 CSSCYRKSSCTHFGCWR 346
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 348 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 440
E FD L L+ P GK LV G + + V
Sbjct: 373 ETTIFDDLCLKIPAGKTVALVGGSGSGKSTV 403
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 8.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 348 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 440
E FD LR P+GK LV G + + V
Sbjct: 373 ETSIFDDFCLRVPSGKTVALVGGSGSGKSTV 403
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,931,379
Number of Sequences: 28952
Number of extensions: 278745
Number of successful extensions: 778
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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