Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30629
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    82   7e-17
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    26   6.3  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 82.2 bits (194), Expect = 7e-17
 Identities = 38/87 (43%), Positives = 56/87 (64%)
 Frame = +2

Query: 14   KGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLEMH 193
            K D++ +F   +  TSLQ+  L+ G  E LL+  + G++GV  PF ++ED  FFQ LE  
Sbjct: 1078 KLDLMAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFL 1137

Query: 194  MRSENSPLCGRDHLSFRSYYSQ*RYVL 274
            +R E  PL GRDHL++RSYY+  + V+
Sbjct: 1138 LRKECPPLAGRDHLAYRSYYAPVKCVI 1164


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 490 QRTRLSRMQHPIARRRHHNGRSHAVHNSSALLYQQCNTNVFRMKTSAD*LSE 335
           Q T+ S +    A     + RSHA +  SAL Y+   T +  +K++   L E
Sbjct: 217 QPTKASPLNKFSALEAIQSARSHARYAYSALDYEDTTTAIHHLKSALKLLEE 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,363
Number of Sequences: 5004
Number of extensions: 66751
Number of successful extensions: 140
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)