Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30629
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198...   123   1e-28
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560...    35   0.076
06_01_0245 - 1849156-1849197,1849300-1849341,1849564-1849605,184...    32   0.41 
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378...    29   2.9  
09_02_0226 - 6007656-6008063,6012166-6012678                           29   5.0  
05_05_0034 - 21741148-21741275,21741890-21741928,21742007-217421...    29   5.0  
06_03_0743 + 24069752-24070483,24071890-24072345                       28   8.7  

>02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,
            1982950-1983087
          Length = 1228

 Score =  123 bits (297), Expect = 1e-28
 Identities = 53/84 (63%), Positives = 66/84 (78%)
 Frame = +2

Query: 2    GASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQH 181
            GA  K + +V FHVG+ VT LQ+A+LIPGG E L+Y T+ GS+G LL FTSRED DFF H
Sbjct: 1096 GAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVGALLAFTSREDVDFFSH 1155

Query: 182  LEMHMRSENSPLCGRDHLSFRSYY 253
            LEMH+R E+ PLCGRDH+++RS Y
Sbjct: 1156 LEMHLRQEHPPLCGRDHMAYRSAY 1179


>07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,
            5602859-5602935,5603349-5603487,5604306-5604618,
            5605084-5605394,5607245-5609141,5609239-5609374,
            5609519-5609607,5610424-5610507,5611112-5611191,
            5611312-5611446,5612340-5612585
          Length = 1303

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 110  ATISGSLGVLLPFTSREDHDFFQHLE--MHMRSENSPLCGRDHLSFR 244
            +T+ GS+ V++P TS E+H   Q ++  + +    +PL G DH  FR
Sbjct: 1196 STLLGSIFVMIPLTS-EEHQMLQDVQERLSVHPLTAPLLGNDHAEFR 1241


>06_01_0245 -
           1849156-1849197,1849300-1849341,1849564-1849605,
           1849697-1849824,1850078-1850285,1850381-1850561,
           1851761-1852114,1852577-1852803
          Length = 407

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 158 EDHDFFQHLEMHMRSENSPLCGRDHLSF---RSYYSQ*RYVLTCC 283
           E H +F H+     ++ S    RDHL F    S   Q  YV+TCC
Sbjct: 271 ESHRWFDHINFTANTKGSKGLDRDHLFFAEAMSLEGQKDYVVTCC 315


>02_01_0522 +
           3779404-3779439,3779594-3779709,3780120-3780327,
           3781446-3781611,3781713-3781842,3782496-3782619,
           3782794-3782844,3783140-3783262,3783504-3783602,
           3783680-3783790,3783868-3783957,3784035-3784175,
           3787913-3788116,3788154-3788290,3788429-3788662,
           3789535-3789829,3789963-3790017,3790144-3790245,
           3790581-3790669,3790807-3790899
          Length = 867

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 393 YSKADELCTACDLPLW*RRLAIGCCILESRVRCYQLIC 506
           Y K DELC  C +    RR  +  C++++ + C ++ C
Sbjct: 527 YKKIDELCLLCMI----RRSVVLFCVIQNLINCLKIGC 560


>09_02_0226 - 6007656-6008063,6012166-6012678
          Length = 306

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 654 GIKAKG-WWVPTPCGLTRGPTHQ*CEI 577
           G   KG +W+PTP  +  GPTH  C +
Sbjct: 133 GKLTKGKYWIPTPTQILIGPTHFACPV 159


>05_05_0034 -
           21741148-21741275,21741890-21741928,21742007-21742121,
           21742227-21742292,21743213-21743371,21743573-21743609,
           21743757-21744194,21744735-21744817,21744920-21744956,
           21745146-21745214,21745316-21745407,21745481-21745565,
           21745903-21745982,21746327-21746724,21746813-21747717,
           21747825-21747915,21748617-21750680,21750681-21750749,
           21750850-21751273,21751644-21751763
          Length = 1832

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
 Frame = -2

Query: 478 LSRMQHPIARRRHHNGRSHAV---HNSSALLYQQCNTNVFRMKTSAD*LSECNLKFTKFI 308
           L+R Q  +     HN RS  +    N   L     NTN F+M  SA  L E +    +  
Sbjct: 534 LARKQDDVRHIHDHNERSGLITTKQNKKDLDLNYSNTNGFQMYCSASLLPEMDSTKGRMT 593

Query: 307 KTSIFSNNATSEY 269
           K S    N    Y
Sbjct: 594 KVSKMDKNQKRHY 606


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 654 GIKAKG-WWVPTPCGLTRGPTHQ*CEISY 571
           G   KG +W+PTP  +  GPT   C + Y
Sbjct: 206 GKLTKGQYWIPTPSQILIGPTQFSCPVCY 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,044,719
Number of Sequences: 37544
Number of extensions: 445868
Number of successful extensions: 1029
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)