Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30629
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   2e-12
SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          29   5.1  
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_13562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   28   8.9  

>SB_11717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 30/47 (63%), Positives = 41/47 (87%)
 Frame = +2

Query: 20  DVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSRE 160
           + + N+ VGETV SLQ+ATLIPGGSE+L++ T+SG +G+L+PFTSRE
Sbjct: 127 ETMCNYFVGETVLSLQKATLIPGGSESLVFTTLSGGVGMLVPFTSRE 173


>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 8    SQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLE 187
            S +  ++        +T+  +++LI   S++LL  T S SL +         HDFF  + 
Sbjct: 857  SSQSSLITTSSQSSLITTSSQSSLITTSSQSLLITTSSQSLLITTSSQVITHHDFFSIIT 916

Query: 188  MH 193
             H
Sbjct: 917  HH 918


>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 626 GTHHPLALIPAVGAVMRFRFERWGQPLANHTGD 724
           G   P+AL+PA+G  ++ +FE    PLA +T D
Sbjct: 45  GNASPVALVPAIGQRVQGKFE----PLAQYTAD 73


>SB_36890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1881

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 541  CRLERKTNPRIRYFALLVGRTSCESARGRYPPPF 642
            C   ++  P I + AL+VG TSC   + R   PF
Sbjct: 1220 CFCAKRYGPEIPFNALIVGPTSCGKTQFRLRGPF 1253


>SB_13562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 691 PFKPETHYCSHGRN*GQRVV 632
           PF  ETHYC H  N  +++V
Sbjct: 71  PFSKETHYCPHSFNIERQIV 90


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 668 LLPRQELRPKGGGYLPRADSQEVLPTSNA 582
           L+P Q LRP G   LP  + ++VL  +N+
Sbjct: 418 LMPSQSLRPPGNLSLPSTNEKQVLRRTNS 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,131,193
Number of Sequences: 59808
Number of extensions: 505940
Number of successful extensions: 1116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)