Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30629
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a... 119 2e-27
Z92775-3|CAB62778.2| 396|Caenorhabditis elegans Hypothetical pr... 31 0.64
AB070577-1|BAC66472.1| 396|Caenorhabditis elegans L-3,4-dihydro... 31 0.64
AF036706-6|AAK39275.2| 481|Caenorhabditis elegans Glutamyl(e)/g... 29 3.4
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p... 28 7.9
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr... 28 7.9
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 28 7.9
>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
assigned gene nameprotein 203 protein.
Length = 1220
Score = 119 bits (286), Expect = 2e-27
Identities = 51/91 (56%), Positives = 74/91 (81%)
Frame = +2
Query: 2 GASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQH 181
GASQK ++V NF +G+T+TSLQ+ +L+PG +EAL+Y TI G++G L+ F S+++ DFF +
Sbjct: 1087 GASQKVELVSNFFIGDTITSLQKTSLMPGANEALVYTTIGGAIGCLVSFMSKDEVDFFTN 1146
Query: 182 LEMHMRSENSPLCGRDHLSFRSYYSQ*RYVL 274
LEMH+RSE PLCGRDHL++RSYY+ + V+
Sbjct: 1147 LEMHVRSEYPPLCGRDHLAYRSYYAPCKSVI 1177
>Z92775-3|CAB62778.2| 396|Caenorhabditis elegans Hypothetical
protein C06H5.7 protein.
Length = 396
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 637 VVGTYPVRTHKRSYPPVMRNILCVGLFSFLICILDKVELFILKLQI 500
V+ YP +R+Y +MR + C+ LF + CILD + F Q+
Sbjct: 277 VLNPYPC-LFQRNYAEMMRLLGCIRLFLVIRCILDPLLAFFTDFQL 321
>AB070577-1|BAC66472.1| 396|Caenorhabditis elegans
L-3,4-dihydroxyphenylalanine receptorprotein.
Length = 396
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 637 VVGTYPVRTHKRSYPPVMRNILCVGLFSFLICILDKVELFILKLQI 500
V+ YP +R+Y +MR + C+ LF + CILD + F Q+
Sbjct: 277 VLNPYPC-LFQRNYAEMMRLLGCIRLFLVIRCILDPLLAFFTDFQL 321
>AF036706-6|AAK39275.2| 481|Caenorhabditis elegans
Glutamyl(e)/glutaminyl(q) trnasynthetase protein 3
protein.
Length = 481
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 173 FQHLEMHMRSENSPLCGRDHLSFRSYYSQ 259
F HL + MRS L RD +F SYYS+
Sbjct: 243 FVHLSLIMRSATKKLSKRDKDAFVSYYSE 271
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 719 QYGLPTAAPTFQTGNALLLPRQELRPKGGGYLPRADSQ 606
Q G P +QTGNAL +P+ +L G Y+ A +Q
Sbjct: 1170 QLGGPLPHGVYQTGNALKIPQSQLH-HAGRYICSAANQ 1206
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 719 QYGLPTAAPTFQTGNALLLPRQELRPKGGGYLPRADSQ 606
Q G P +QTGNAL +P+ +L G Y+ A +Q
Sbjct: 1263 QLGGPLPHGVYQTGNALKIPQSQLH-HAGRYICSAANQ 1299
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 719 QYGLPTAAPTFQTGNALLLPRQELRPKGGGYLPRADSQ 606
Q G P +QTGNAL +P+ +L G Y+ A +Q
Sbjct: 1263 QLGGPLPHGVYQTGNALKIPQSQLH-HAGRYICSAANQ 1299
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 719 QYGLPTAAPTFQTGNALLLPRQELRPKGGGYLPRADSQ 606
Q G P +QTGNAL +P+ +L G Y+ A +Q
Sbjct: 1263 QLGGPLPHGVYQTGNALKIPQSQLH-HAGRYICSAANQ 1299
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 719 QYGLPTAAPTFQTGNALLLPRQELRPKGGGYLPRADSQ 606
Q G P +QTGNAL +P+ +L G Y+ A +Q
Sbjct: 1170 QLGGPLPHGVYQTGNALKIPQSQLH-HAGRYICSAANQ 1206
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 719 QYGLPTAAPTFQTGNALLLPRQELRPKGGGYLPRADSQ 606
Q G P +QTGNAL +P+ +L G Y+ A +Q
Sbjct: 1263 QLGGPLPHGVYQTGNALKIPQSQLH-HAGRYICSAANQ 1299
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 719 QYGLPTAAPTFQTGNALLLPRQELRPKGGGYLPRADSQ 606
Q G P +QTGNAL +P+ +L G Y+ A +Q
Sbjct: 1263 QLGGPLPHGVYQTGNALKIPQSQLH-HAGRYICSAANQ 1299
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 719 QYGLPTAAPTFQTGNALLLPRQELRPKGGGYLPRADSQ 606
Q G P +QTGNAL +P+ +L G Y+ A +Q
Sbjct: 1263 QLGGPLPHGVYQTGNALKIPQSQLH-HAGRYICSAANQ 1299
>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 29 VNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLL-PFTSREDHDFFQHL 184
+ F VG+ V +++A L P GS A T + +GVLL S DH F+ +
Sbjct: 530 IEFFVGQQV-QMKKAPLYPAGSVAAQIDTSNPMIGVLLEDCWSATDHCRFRSM 581
>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
protein F36A2.13 protein.
Length = 2944
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 29 VNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLL-PFTSREDHDFFQHL 184
+ F VG+ V +++A L P GS A T + +GVLL S DH F+ +
Sbjct: 530 IEFFVGQQV-QMKKAPLYPAGSVAAQIDTSNPMIGVLLEDCWSATDHCRFRSM 581
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 719 QYGLPTAAPTFQTGNALLLPRQELRPKGGGYLPRADSQ 606
Q G P +QTGNAL +P+ +L G Y+ A +Q
Sbjct: 1262 QLGGPLPHGVYQTGNALKIPQSQLH-HAGRYICSAANQ 1298
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,810,192
Number of Sequences: 27780
Number of extensions: 387480
Number of successful extensions: 886
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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