Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30629
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55220.1 68416.m06133 splicing factor, putative contains CPSF...   122   3e-28
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF...   122   3e-28
At5g44980.1 68418.m05516 F-box family protein contains F-box dom...    29   2.4  
At3g11960.2 68416.m01476 cleavage and polyadenylation specificit...    29   4.2  
At3g11960.1 68416.m01475 cleavage and polyadenylation specificit...    29   4.2  
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    28   7.3  
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ...    27   9.6  
At4g29500.1 68417.m04209 prolidase-related contains similarity t...    27   9.6  

>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
            subunit region (PF03178); contains weak WD-40 repeat
            (PF00400); similar to Splicing factor 3B subunit 3
            (SF3b130)/spliceosomal protein/Splicing factor 3B subunit
            3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
            EMBL:HSAJ1443_1
          Length = 1214

 Score =  122 bits (293), Expect = 3e-28
 Identities = 52/84 (61%), Positives = 66/84 (78%)
 Frame = +2

Query: 2    GASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQH 181
            GA  K D +V FHVG+ VT LQ+A++IPGGSE+++Y T+ GS+G L  FTSR+D DFF H
Sbjct: 1082 GAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSH 1141

Query: 182  LEMHMRSENSPLCGRDHLSFRSYY 253
            LEMHMR E  PLCGRDH+++RS Y
Sbjct: 1142 LEMHMRQEYPPLCGRDHMAYRSAY 1165


>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
            subunit region (PF03178); contains weak WD-40 repeat
            (PF00400); similar to Splicing factor 3B subunit 3
            (SF3b130)/spliceosomal protein/Splicing factor 3B subunit
            3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
            EMBL:HSAJ1443_1
          Length = 1214

 Score =  122 bits (293), Expect = 3e-28
 Identities = 52/84 (61%), Positives = 66/84 (78%)
 Frame = +2

Query: 2    GASQKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQH 181
            GA  K D +V FHVG+ VT LQ+A++IPGGSE+++Y T+ GS+G L  FTSR+D DFF H
Sbjct: 1082 GAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSH 1141

Query: 182  LEMHMRSENSPLCGRDHLSFRSYY 253
            LEMHMR E  PLCGRDH+++RS Y
Sbjct: 1142 LEMHMRQEYPPLCGRDHMAYRSAY 1165


>At5g44980.1 68418.m05516 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 435

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
 Frame = +3

Query: 291 ENIDVFINLVNFKLHSDSQSADVFILKTFVLHCWYSKADELCTACDLPLW*RRLAIGCCI 470
           +NI     LV+ KLH+       F++    L     K + +C   D PL   +L  GC +
Sbjct: 125 QNIYKSKTLVSLKLHNVELKNSDFVVSLPCLKIL--KLENICHGEDGPLVVEKLISGCSV 182

Query: 471 LES-------RVRCYQLICSFRMNSSTLSNMQI 548
           LE         +R ++++   R++S TL +  +
Sbjct: 183 LEDLELIRPFDIRTHKVLLLLRVSSQTLKSFTL 215


>At3g11960.2 68416.m01476 cleavage and polyadenylation specificity
            factor (CPSF) A subunit C-terminal domain-containing
            protein similar to Splicing factor 3B subunit 3
            (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
            (Pre-mRNA splicing factor SF3b 130kDa subunit)
            (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
            A subunit region
          Length = 1329

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 11   QKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLE- 187
            +KG  +      + + S   +  I    + ++  T+ GS+ V  P +S E+++  + ++ 
Sbjct: 1180 KKGCNIYKLPADDVLRSYGLSKSIDTADDTIIAGTLLGSIFVFAPISS-EEYELLEGVQA 1238

Query: 188  -MHMRSENSPLCGRDHLSFR 244
             + +    +P+ G DH  FR
Sbjct: 1239 KLGIHPLTAPVLGNDHNEFR 1258


>At3g11960.1 68416.m01475 cleavage and polyadenylation specificity
            factor (CPSF) A subunit C-terminal domain-containing
            protein similar to Splicing factor 3B subunit 3
            (Spliceosome associatedprotein 130) (SAP 130) (SF3b130)
            (Pre-mRNA splicing factor SF3b 130kDa subunit)
            (SP:Q15393) [Homo sapiens]; contains Pfam PF03178 : CPSF
            A subunit region
          Length = 1379

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 11   QKGDVVVNFHVGETVTSLQRATLIPGGSEALLYATISGSLGVLLPFTSREDHDFFQHLE- 187
            +KG  +      + + S   +  I    + ++  T+ GS+ V  P +S E+++  + ++ 
Sbjct: 1230 KKGCNIYKLPADDVLRSYGLSKSIDTADDTIIAGTLLGSIFVFAPISS-EEYELLEGVQA 1288

Query: 188  -MHMRSENSPLCGRDHLSFR 244
             + +    +P+ G DH  FR
Sbjct: 1289 KLGIHPLTAPVLGNDHNEFR 1308


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -3

Query: 498 ADNSEPDSQECSIRSQGGVTITADRTPCITRQPCYTNSV 382
           A + +P+   C +   GG  I  D  P    Q C +  V
Sbjct: 719 ASDDDPNDDSCGVCGDGGELICCDNCPSTFHQACLSMQV 757


>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
           protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
          Length = 947

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 669 TAPTAGIKAKGWWVPTPCGLTRGPTH 592
           T P   I   G W+P P   TR P H
Sbjct: 397 TEPYIMIAGSGRWIPPPLPATRSPEH 422


>At4g29500.1 68417.m04209 prolidase-related contains similarity to
           prolidase GI:3114966 from [Suberites domuncula]
          Length = 169

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 708 ANGCPHLSNRKRITAPTAGIKAKGWWVPT 622
           ANGC +++N  R T     + A G W PT
Sbjct: 140 ANGCKNMTNVPRETWEIEAVMAGGPWPPT 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,634,945
Number of Sequences: 28952
Number of extensions: 352278
Number of successful extensions: 809
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)