Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30628
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    29   0.50 
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    27   2.7  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    25   8.1  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 489 YKPKNCKLKTKSVFCSTLDLPS-ENSQCQLCSSTY 388
           +K    KL  ++++ S L + + EN QC  C STY
Sbjct: 718 FKSDKVKLNIRTLYASHLSMANLENLQCAACQSTY 752


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -2

Query: 601 VGTSICWN---LKNLNISSKFTFFLSGLKITRFSNSLFRTL 488
           + TS  W    L  L+I   F  FL+ +  TRF N L+RTL
Sbjct: 79  INTSRSWFRAFLSFLSICFLFISFLNFIFSTRFQNKLYRTL 119


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 482 LKTVSLKLNQCSAVLLTCLQKTLNASYVLL 393
           LK ++ +L + +  LLTCL  TLN+   +L
Sbjct: 219 LKGLNNELKKSNGTLLTCLSGTLNSLVEML 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,252
Number of Sequences: 5004
Number of extensions: 48186
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)