Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30628
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534...    33   0.30 
01_01_0881 - 6908939-6909190,6909298-6909351,6909588-6909734,690...    30   2.1  
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965...    29   4.8  
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665...    28   6.4  
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    28   6.4  
11_01_0409 - 3096372-3097052,3097324-3098652                           28   8.5  
04_04_1542 - 34264994-34265331,34266195-34267029                       28   8.5  

>01_05_0037 -
           17452503-17452523,17452594-17452689,17453315-17453419,
           17453699-17453869,17454309-17454378,17454698-17454879,
           17457297-17457406,17458353-17458457,17458537-17458615,
           17458722-17458762,17459019-17459097,17460620-17460814
          Length = 417

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = -1

Query: 491 LINLKTVSLKLNQCS-----AVLLTCLQKTLNASYVLLRMIQGDGSEVGYG 354
           L+N+  VS+    C+     A   TC   TLN++YVLL+ I G  S   YG
Sbjct: 306 LVNVAIVSISGTICANNLSFADTSTCSSLTLNSTYVLLKNILGKSSSTVYG 356


>01_01_0881 -
           6908939-6909190,6909298-6909351,6909588-6909734,
           6909836-6910042,6910664-6911098
          Length = 364

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 82  HVSTTNVDVCIVAVFLASLVREHNTTL 2
           HV +  +DVC+V    A +V  H+TTL
Sbjct: 81  HVDSAGIDVCLVGDSAAMVVHGHDTTL 107


>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
            34897176-34897352,34897426-34897492,34898043-34898101,
            34898188-34898241,34898455-34898604,34898709-34898918,
            34898980-34899039,34899399-34899527,34899616-34899720,
            34899935-34900024,34900630-34900695,34901047-34901115,
            34901348-34901467,34901572-34901634,34901681-34901817,
            34902070-34902160,34902298-34902463,34902700-34904172,
            34905666-34905940,34906322-34906819,34906996-34907145,
            34907840-34907911,34908006-34908266,34908478-34908558,
            34908745-34908996,34909323-34909382,34909602-34909853,
            34910385-34910549,34910589-34910849,34911267-34912307,
            34913398-34913457,34914055-34914165,34914448-34914534,
            34915227-34915300,34915397-34915490,34915644-34915689,
            34916397-34916521
          Length = 2501

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 465  KTKSVFCSTLDLPSENSQCQLCSSTY 388
            + K+ FC  +D+P E+S  +LC+  Y
Sbjct: 1253 REKNKFCRLMDVPRESSPKELCAQPY 1278


>04_03_0256 -
           13564070-13564456,13564543-13565299,13565734-13566535,
           13566884-13566917
          Length = 659

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 3   SVVLCSRTKLAKKTATMQTSTFVVLTCLIAVVVADLYIEQNQ 128
           S+  C  TK   +T T+  S    +  LI VVV  +Y+++ +
Sbjct: 305 SLFFCPYTKQKLQTKTILVSILAAIGALILVVVVAIYVQKRR 346


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 305 KSKAGHHHHPPP 340
           K K  HHHHPPP
Sbjct: 102 KKKRHHHHHPPP 113


>11_01_0409 - 3096372-3097052,3097324-3098652
          Length = 669

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +1

Query: 643 VYLMFLVN---NWFHEGF*NWSFPV 708
           VYLM   N    WFH GF  WS P+
Sbjct: 87  VYLMGFRNMNGEWFHLGFSKWSVPI 111


>04_04_1542 - 34264994-34265331,34266195-34267029
          Length = 390

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 317 GHHHHPPP 340
           GHHHHPPP
Sbjct: 248 GHHHHPPP 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,640,590
Number of Sequences: 37544
Number of extensions: 290466
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)