Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30628
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33586| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-36)                 29   4.9  
SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)               28   6.5  
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)             28   6.5  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   8.6  
SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)                28   8.6  

>SB_33586| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-36)
          Length = 355

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 12  LCSRTKLAKKTATMQTSTFVVLTCLIAVVVADLYIEQNQSP 134
           +CS    A+KT T+   TF V  C+I  +V  +Y     SP
Sbjct: 266 ICSLNGKARKTVTLLVGTFAV--CMIPFLVFQIYDTFTMSP 304


>SB_12737| Best HMM Match : C_tripleX (HMM E-Value=0.027)
          Length = 442

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 8   CVVFTYQTCQENCHNADINIRCA 76
           C V  Y TC + C++A  N++CA
Sbjct: 55  CDVTKYDTCGQICNSAKCNLQCA 77


>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
          Length = 489

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 8   CVVFTYQTCQENCHNADINIRCA 76
           C V  Y TC + C++A  N++CA
Sbjct: 55  CDVTKYDTCGQICNSAKCNLQCA 77


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -3

Query: 555  LNSPSSLVV*KLQDFLTVYSEPYKPKNCKLKTKSVFCSTLDLPSE 421
            L SPS +VV      L  + +P KP N KL    V  +T+D+PSE
Sbjct: 1966 LKSPS-IVVQGNDSLLVQWDQPTKP-NGKLIGYEVLMATVDVPSE 2008


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 5    CCVVFTYQTCQENCHNADINIRCANMPHR 91
            C  +FT      NCH A++N R  + PH+
Sbjct: 1151 CAQMFTGAWWYNNCHEANLNGRYRHGPHK 1179


>SB_55766| Best HMM Match : Keratin_B2 (HMM E-Value=1.8)
          Length = 245

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 166 SYT-DSWTVSTTGDWFCSIYKSATTTAMRHVSTTNVDVC 53
           +YT DS T S T    CSI +   T+     STT + VC
Sbjct: 3   TYTSDSATTSATTICVCSIIRCTYTSDRTTTSTTTIGVC 41


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,791,839
Number of Sequences: 59808
Number of extensions: 353342
Number of successful extensions: 896
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)