Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30628
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   2.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.6  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 559 KCSSFSDSNRLMCLLMIV*CFHK 627
           +CS  SD N L+ +  I+ CF K
Sbjct: 103 ECSPISDPNALIKISKILECFFK 125


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 200 ERVASIEEEATTWCSWTE 253
           ER +   ++   WC+W+E
Sbjct: 376 ERNSGATDKIIRWCTWSE 393


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 200 ERVASIEEEATTWCSWTE 253
           ER +   ++   WC+W+E
Sbjct: 376 ERNSGATDKIIRWCTWSE 393


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +2

Query: 200 ERVASIEEEATTWCSWTE 253
           ER +   ++   WC+W+E
Sbjct: 376 ERNSGATDKIIRWCTWSE 393


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,086
Number of Sequences: 438
Number of extensions: 3337
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)