Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30628
         (713 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46110.1 68415.m05735 ketopantoate hydroxymethyltransferase f...    29   3.1  
At3g61530.2 68416.m06892 ketopantoate hydroxymethyltransferase f...    29   4.0  
At3g61530.1 68416.m06891 ketopantoate hydroxymethyltransferase f...    29   4.0  

>At2g46110.1 68415.m05735 ketopantoate hydroxymethyltransferase
           family protein similar to SP|Q9Y7B6
           3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
           {Emericella nidulans}; contains Pfam profile PF02548:
           Ketopantoate hydroxymethyltransferase
          Length = 347

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 82  HVSTTNVDVCIVAVFLASLVREHNTTL 2
           H+ T  +DVC+V    + +V  H+TTL
Sbjct: 70  HLDTAGIDVCLVGDSASMVVHGHDTTL 96


>At3g61530.2 68416.m06892 ketopantoate hydroxymethyltransferase
           family protein similar to SP|Q9Y7B6
           3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
           {Emericella nidulans}; contains Pfam profile PF02548:
           Ketopantoate hydroxymethyltransferase
          Length = 354

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 82  HVSTTNVDVCIVAVFLASLVREHNTTL 2
           H+ T  +DVC+V    A +V  ++TTL
Sbjct: 72  HIDTAGIDVCLVGDSAAMVVHGYDTTL 98


>At3g61530.1 68416.m06891 ketopantoate hydroxymethyltransferase
           family protein similar to SP|Q9Y7B6
           3-methyl-2-oxobutanoate hydroxymethyltransferase (EC
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
           {Emericella nidulans}; contains Pfam profile PF02548:
           Ketopantoate hydroxymethyltransferase
          Length = 354

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 82  HVSTTNVDVCIVAVFLASLVREHNTTL 2
           H+ T  +DVC+V    A +V  ++TTL
Sbjct: 72  HIDTAGIDVCLVGDSAAMVVHGYDTTL 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,201
Number of Sequences: 28952
Number of extensions: 245836
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)