Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30625
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    29   0.61 
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   1.9  
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb...    27   2.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   7.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.9  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   9.9  

>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 302 EEKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQ 451
           E+     S++   S++ KP E  AP S  +IK+D P N     N ++  Q
Sbjct: 336 EQSIDVSSDIGLRSDSSKPNE--APTSSENIKADQPENSTKQENPEEDMQ 383


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 410 VVYLILWRYRSKAPPI-L*ALDFQMWPKLRTPFEVFLQA*AER*PSEVSAFV 258
           V+YL +W     +  + + +L +Q W KL  P  VFL       P E   F+
Sbjct: 39  VMYLTMWNSDLNSEALDVNSLQWQTWAKLNDPSIVFLNVSNHASPDEKVPFI 90


>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 664 KIRKEYLFSTKTII*ISYG*LIANKCILYHFLNLPPVIC 548
           K+RK+    T+ II +  G  + +   + H +NLP +IC
Sbjct: 137 KLRKQCPDDTQVIIGVGGGKTMDSAKYIAHSMNLPSIIC 175


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 374 PLSDISIKSDTPHNKEASVNKQKRP 448
           P SD SIKS     +E+S +++K P
Sbjct: 182 PESDQSIKSSRNRRRESSFSREKNP 206


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 323  SEVLATSENPKPTESAAPLSDISIKSDTPHN 415
            S  + +S     + SAA  +D S+ +DTP N
Sbjct: 1129 SSTVTSSATASSSSSAATTADSSVTTDTPSN 1159


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 470 PALISAFVVVFVYLRTLLYCVVYLILWRY 384
           P ++S+F  +F +L   LYC+ Y   W Y
Sbjct: 160 PMVVSSFAHIFGHL---LYCMAYRANWIY 185


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein
          Nrd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 96 PYSQN*VELPQRAPITRPTPLPHTL 22
          P SQ+ + +P R P   P  +PHT+
Sbjct: 6  PSSQSRLSVPGRTPHLPPLTIPHTV 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,993
Number of Sequences: 5004
Number of extensions: 41079
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)