Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30625
(671 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 32 0.32
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 32 0.32
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 29 4.0
Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical pr... 28 5.3
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 28 6.9
U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF038623-8|AAB94160.2| 631|Caenorhabditis elegans Hypothetical ... 28 6.9
AF016445-11|AAC69054.1| 248|Caenorhabditis elegans Pharyngeal g... 28 6.9
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 27 9.2
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 27 9.2
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 27 9.2
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/57 (42%), Positives = 28/57 (49%)
Frame = -3
Query: 375 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFGFCCSTD*SLQTPTALLSRAS 205
GA +S GF +TS S F SG GG+ T GFG +TD S TA AS
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFGAPSTTDSSSGQQTAGFGGAS 413
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 32.3 bits (70), Expect = 0.32
Identities = 24/57 (42%), Positives = 28/57 (49%)
Frame = -3
Query: 375 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFGFCCSTD*SLQTPTALLSRAS 205
GA +S GF +TS S F SG GG+ T GFG +TD S TA AS
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFGAPSTTDSSSGQQTAGFGGAS 413
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 302 EEKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASV 430
EEK + E +V PKP S P D+ K+D K+ ++
Sbjct: 207 EEKKEDEKKVEPKPGEPKPHISIEPPGDLMFKADQQEQKKLTL 249
>Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical
protein F21H7.5 protein.
Length = 306
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 332 LATSENPKPTESAAPLSDISIKSDTPHNKEAS 427
L ++N PT + A +SD+SIKSD+ E S
Sbjct: 142 LNKAKNLCPTVNQADVSDVSIKSDSGEKSEKS 173
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/56 (25%), Positives = 22/56 (39%)
Frame = -3
Query: 267 GFCCSTD*SLQTPTALLSRASLTIMIRQTTRPASWR*LARLREPENFPFHSDSDCI 100
GFCC+TD P A R + + + +WR + P F + C+
Sbjct: 242 GFCCNTD-DYSCPNAQFPRLNCDTITNNQCKDPNWRTIIATDCPSACGFCNQGGCV 296
>U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical
protein C16D9.4 protein.
Length = 409
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 305 EKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQ 439
EKPQ S+V+ TS KP +S S S P N S+ KQ
Sbjct: 85 EKPQRSSKVINTSSESKPAQSQIAASQRS-SPGYPQNL-TSIGKQ 127
>AF038623-8|AAB94160.2| 631|Caenorhabditis elegans Hypothetical
protein T08B6.4 protein.
Length = 631
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 341 SENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRP 448
S N +S + D+ +++ P N E ++ K KRP
Sbjct: 158 SNNMTGKDSNKDVKDVDVEAANPENPETNICKDKRP 193
>AF016445-11|AAC69054.1| 248|Caenorhabditis elegans Pharyngeal
gland toxin-relatedprotein 4 protein.
Length = 248
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/56 (25%), Positives = 22/56 (39%)
Frame = -3
Query: 267 GFCCSTD*SLQTPTALLSRASLTIMIRQTTRPASWR*LARLREPENFPFHSDSDCI 100
GFCCSTD + P R + + + +WR + P F + C+
Sbjct: 103 GFCCSTD-AYNCPNVAFPRLNCNTITKAQCDSVTWRTIIAADCPSACGFCNQGGCV 157
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 375 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 265
G ++ G GF + G SSG GG GFG
Sbjct: 75 GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 375 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 265
G ++ G GF + G SSG GG GFG
Sbjct: 75 GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 375 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 265
G ++ G GF + G SSG GG GFG
Sbjct: 75 GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,750,902
Number of Sequences: 27780
Number of extensions: 230105
Number of successful extensions: 780
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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