Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30625
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR...    29   3.7  
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR...    29   3.7  
At4g18190.1 68417.m02703 purine permease family protein similar ...    29   3.7  
At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...    28   4.9  
At2g24030.2 68415.m02870 expressed protein  and genefinder             28   4.9  
At2g24030.1 68415.m02871 expressed protein  and genefinder             28   4.9  
At5g46640.1 68418.m05744 DNA-binding family protein contains a A...    28   6.5  
At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domai...    28   6.5  

>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1298

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 525 HCFSLVCLFLRIRGSNKLASIDFSLCG 445
           HC+SLV L   IR  NKL  ++   CG
Sbjct: 700 HCWSLVELPSSIRNLNKLLELNMEYCG 726


>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1353

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 525 HCFSLVCLFLRIRGSNKLASIDFSLCG 445
           HC+SLV L   IR  NKL  ++   CG
Sbjct: 661 HCWSLVELPSSIRNLNKLLELNMEYCG 687


>At4g18190.1 68417.m02703 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 358

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 643 FSTKTII*ISYG*LIANKCILYHF-LNLPPVICVAIVALATLLF 515
           F T +++ I  G L+A  CILY F L   PV   ++++ + L F
Sbjct: 77  FLTLSLVYIGLGLLVAGHCILYSFGLLYLPVSTFSLISASQLAF 120


>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 645 YFQRKQSYKYLMVNLLLINAFCITS*IF 562
           Y  R Q+ K+L VNL L    CI   IF
Sbjct: 19  YMTRSQALKHLQVNLNLFRRLCIVKGIF 46


>At2g24030.2 68415.m02870 expressed protein  and genefinder
          Length = 374

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 105 NQSQNGTENFRVHVNGLVIAMMPAESFAESLLSAM---PDLEELLESEGINQLNNKSRNL 275
           NQ+QN   NF       + +++   S+   L S M   P L+++ E+ G + L +   NL
Sbjct: 34  NQNQNQFNNFFRQKYSYIDSLINTGSYNSLLTSPMMQLPQLQQMSEATGTSMLESNKENL 93


>At2g24030.1 68415.m02871 expressed protein  and genefinder
          Length = 455

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 105 NQSQNGTENFRVHVNGLVIAMMPAESFAESLLSAM---PDLEELLESEGINQLNNKSRNL 275
           NQ+QN   NF       + +++   S+   L S M   P L+++ E+ G + L +   NL
Sbjct: 115 NQNQNQFNNFFRQKYSYIDSLINTGSYNSLLTSPMMQLPQLQQMSEATGTSMLESNKENL 174


>At5g46640.1 68418.m05744 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 386

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 305 EKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRP 448
           +KP+  S  +A  +NP+P  + A + +    S  P ++ +  N+   P
Sbjct: 300 KKPKQSSVNIARGQNPEPASAPANMLNFGSVSQGPSSESSEENESGSP 347


>At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 793

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 326 EVLATSENPKPTESAAPLSDISIKSDTPHNKEASVN 433
           ++LA + +PKPT+++ P S     S +P +    VN
Sbjct: 39  QILAVATDPKPTQTSPPKSTTVNGSSSPSSASKVVN 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,959,377
Number of Sequences: 28952
Number of extensions: 209801
Number of successful extensions: 674
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)