Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30624
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    70   4e-13
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   2.9  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   3.9  
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    26   6.8  
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha...    25   9.0  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 69.7 bits (163), Expect = 4e-13
 Identities = 39/123 (31%), Positives = 65/123 (52%)
 Frame = +2

Query: 137 PKQPAYYRHKTSSFRTEMGPCSTQIHCQNFMAECKLNVYLFLTGRCDYLLGQNPPAIPSL 316
           P  PAY + K       +GP    +H   F+A   LN  LF+     +L  QNPP IP  
Sbjct: 82  PSLPAYLQPKNRLQFLFLGPLKV-LH--QFLA---LNWALFVRKPASFLFIQNPPCIPVF 135

Query: 317 PVFRLYCMVSKAQFVIDWHNYAYSIMAMTLEPDHMLVRMARSTERFFGQSSHFNLCVTYA 496
            + +   ++   +F+IDWHN+ YSI+A+ L   H  V++ +  E++  + ++ +L V+  
Sbjct: 136 FIAQCLHILRGTKFIIDWHNFGYSILALKLGKQHTFVKLLKIYEKYMARGAYAHLTVSKR 195

Query: 497 MKE 505
           MK+
Sbjct: 196 MKD 198



 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +3

Query: 15  VVVLGDIGRSPRMQYHALSLANNGLDVKIISY 110
           V+VLGDI RSPRMQYHA+S A  G  V ++ Y
Sbjct: 29  VLVLGDIARSPRMQYHAVSFAKLGWKVDLLGY 60


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 60  HALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHPF 179
           H   L++  LD   I  +E  PLP V  N HI   +L  F
Sbjct: 359 HLPLLSDEKLDKSAIDKIEPTPLPSVHMNSHIAKGELPKF 398


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 711 NARPHTQLKASFLESFNSVSRVWMLQTW 628
           N R  T     FLE+F S SR+  L TW
Sbjct: 220 NVRNSTTQNQDFLENFFSSSRLHHLSTW 247


>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 354 WAFETMQYKRKTGKDGMAGGFWPNK*SHL 268
           ++FE +++K+    DG    FW +K +HL
Sbjct: 97  YSFENLRFKKYPWGDGSKTLFWNDKVNHL 125


>SPAC13G7.11 |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 608 DVPVVLLQQRQWLEYLRWPVVKDQPA 531
           D+  V++QQR W   +RW +    P+
Sbjct: 209 DIENVVIQQRSWTSPIRWQLWGSVPS 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,558
Number of Sequences: 5004
Number of extensions: 79005
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)