Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30624
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 68 9e-12
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 64 2e-10
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 29 3.1
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 29 5.4
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 28 7.1
12_02_0115 - 13809015-13809068,13809530-13809637,13811004-138111... 28 9.4
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 28 9.4
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 67.7 bits (158), Expect = 9e-12
Identities = 28/84 (33%), Positives = 51/84 (60%)
Frame = +2
Query: 257 FLTGRCDYLLGQNPPAIPSLPVFRLYCMVSKAQFVIDWHNYAYSIMAMTLEPDHMLVRMA 436
F R D + QNPP++P+L +L + A+F++DWHN+ Y+++ ++ H++V++
Sbjct: 101 FKIPRPDVFIVQNPPSVPTLAAVKLASWLRGAKFIVDWHNFGYTLLGLSHGRSHIIVKIY 160
Query: 437 RSTERFFGQSSHFNLCVTYAMKED 508
E+ FG+ + CVT AMK +
Sbjct: 161 FWFEKHFGRMADGAFCVTKAMKHE 184
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +3
Query: 3 KVAKVVVLGDIGRSPRMQYHALSLANN-GLDVKIISYVETDPLPEVLNNPHITVIKLHPF 179
K A VVVLGDIGRSPRMQYH+LSLAN G++V I++ +DP + NP I + ++
Sbjct: 11 KRAAVVVLGDIGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKSV 70
Query: 180 EL 185
+L
Sbjct: 71 QL 72
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 63.7 bits (148), Expect = 2e-10
Identities = 27/84 (32%), Positives = 50/84 (59%)
Frame = +2
Query: 257 FLTGRCDYLLGQNPPAIPSLPVFRLYCMVSKAQFVIDWHNYAYSIMAMTLEPDHMLVRMA 436
F R D + QNPP++P+L +L + A+ ++DWHN+ Y+++ ++ H++V++
Sbjct: 101 FKIPRPDVFIVQNPPSVPTLAAVKLASGLRGAKSIVDWHNFGYTLLGLSHGRSHIIVKIY 160
Query: 437 RSTERFFGQSSHFNLCVTYAMKED 508
E+ FG+ + CVT AMK +
Sbjct: 161 FWFEKHFGRMADGAFCVTKAMKHE 184
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Frame = +3
Query: 9 AKVVVLGDIGRSPRMQYHALSLAN-NGLDVKIISYVETDPLPEVLNNPHITVIKLHPFEL 185
A VVLGDIGRSPRMQYH+LSLAN G++V I++ +DP + NP I + ++ +L
Sbjct: 13 AAAVVLGDIGRSPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHIHEMKSVQL 72
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 135 VLNNPHITVIKLHPFELKWGPVVLKYIAKTL 227
VLN P TV LHPF +K+G ++ TL
Sbjct: 146 VLNLPGCTVPSLHPFAIKFGLDTHVFVCNTL 176
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = +3
Query: 156 TVIKLHPFELKWGPVVLKYIAKTL----WQSVSLMFTYSLLEGATICWARTHPPY 308
TV P++ W V +K AK W + SLL AT+ + TH PY
Sbjct: 359 TVFLEPPYDPLWTNVFIKNHAKVSLPLRWSRIQAQGQISLLSRATLTFGLTHYPY 413
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 479 LCVT-YAMKEDCCRIGTSMLAGPLRQAT*DIQATDVVGEARLVRQDGSELPHVWSIQ 646
LCV ++ R G S L+ P+ + + G RL DG+ELP+ W+I+
Sbjct: 1749 LCVDDLVLRRVQTRAGLSKLS-PMWEGPYRVIGVPRPGSVRLATGDGTELPNPWNIE 1804
>12_02_0115 -
13809015-13809068,13809530-13809637,13811004-13811114,
13811891-13811988,13813448-13813563,13814201-13814433,
13816015-13816212,13820448-13820572,13820700-13820787,
13822227-13822332,13823243-13823331,13823427-13823570,
13824174-13824266,13824442-13824508,13825251-13825387,
13825471-13825566,13826322-13826600
Length = 713
Score = 27.9 bits (59), Expect = 9.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 334 IQTKDWQGWYGGW 296
I T+DW GWY W
Sbjct: 294 IWTEDWDGWYADW 306
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = +3
Query: 285 WARTHPPYH--PCQSFVC 332
WARTH PY P Q F C
Sbjct: 496 WARTHQPYRYIPVQEFAC 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,593,317
Number of Sequences: 37544
Number of extensions: 533006
Number of successful extensions: 1088
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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