Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30624
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
 Frame = +3

Query: 9   AKVVVLGDIGRSPRMQYHALSLANNGLDVKIISYVETDPLPEVLNNPHITVIKLHPFE-- 182
           A VVVLGD+GRSPRM  HA  LA+ G DVK+I + ++ P  +++N+P I ++ + P    
Sbjct: 15  AAVVVLGDVGRSPRMCNHAKMLADEGFDVKLIGFFDSIPGEQIMNHPRIKIVGIPPPPDF 74

Query: 183 LKWGPVVLKYIAKTLWQSVSLMFTYSLLEGA 275
           +   P  ++   K  W  ++L    +    A
Sbjct: 75  MDSLPAFVQLPLKLFWNFITLFLALAFQTSA 105



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 13/89 (14%)
 Frame = +2

Query: 281 LLGQNPPAIPSLPVFRLYCMVSKAQFVIDWHNYAYSIM--AMTLEPDHM----------- 421
           +L QNPPA+P++ V  ++ +   A+F IDWHNY YSI+     L  D +           
Sbjct: 111 ILMQNPPALPTMIVCFMFSIFKFAKFSIDWHNYMYSILQNKYQLTDDQVFGNDKKTKKAQ 170

Query: 422 LVRMARSTERFFGQSSHFNLCVTYAMKED 508
           +VR     E   G+ S +NLCVT AM+ D
Sbjct: 171 IVRCVGFLEGLCGKLSDYNLCVTNAMRRD 199


>Z81537-4|CAB04375.2|  669|Caenorhabditis elegans Hypothetical
           protein F41D3.4 protein.
          Length = 669

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 108 YVETDPLPEVLNNPHITVIKLHP---FELKWGPVVLKYIAKTLWQSVSLMFTYSL 263
           Y+    LP  L+NP+ T+I L     F     PV    +   +WQ +  M  Y++
Sbjct: 157 YLIGTKLPAKLHNPYYTIIGLASYLFFHFSPAPVAFNSVLARIWQFIIGMLIYNI 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,575,204
Number of Sequences: 27780
Number of extensions: 449005
Number of successful extensions: 1127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)