Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30624
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    26   0.44 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.44 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    26   0.44 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    26   0.44 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.1  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   4.1  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   4.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   7.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.5  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 195 PVVLKYIAKTLWQSVSLMFTY-SLLEGATICWARTHPPYH 311
           PVV    A  +W  V + F Y SLLE   + +     P H
Sbjct: 355 PVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMH 394


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 195 PVVLKYIAKTLWQSVSLMFTY-SLLEGATICWARTHPPYH 311
           PVV    A  +W  V + F Y SLLE   + +     P H
Sbjct: 324 PVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMH 363


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 195 PVVLKYIAKTLWQSVSLMFTY-SLLEGATICWARTHPPYH 311
           PVV    A  +W  V + F Y SLLE   + +     P H
Sbjct: 375 PVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMH 414


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 195 PVVLKYIAKTLWQSVSLMFTY-SLLEGATICWARTHPPYH 311
           PVV    A  +W  V + F Y SLLE   + +     P H
Sbjct: 324 PVVSNLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPMH 363


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -2

Query: 677 FSKASIRFLVFGCSKHGVVLSHLDVPVVLLQQRQWLEYL 561
           FS   I   +F C   GV L H D PVV    R+ L Y+
Sbjct: 663 FSATGILITLFVC---GVFLKHNDTPVVRASGRE-LSYV 697


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 268 KVRLFVGPEPTRHTILASLS 327
           KV + +GPE +RHT L  L+
Sbjct: 72  KVLVPLGPETSRHTTLGLLT 91


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 63  ALSLANNGLDVKIISYVETDPLPE 134
           A ++A  GLD+K +S+V    LP+
Sbjct: 507 ATAVAARGLDIKNVSHVINYDLPK 530


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
 Frame = +1

Query: 457 RSIFSLQSLCHLCHEGRLLQNWNINAGWS-FTTGHLRYSSH*RCWRSTTGTSRWLRTTPC 633
           R+  SLQ +    +    LQ WN +  W    T +LR       +         +     
Sbjct: 82  RTKMSLQLVLAALYPPNKLQQWNEDLNWQPIATKYLRRYED-NIFLPEDCLLFTIELDRV 140

Query: 634 LEHPNTRNRIEAFEKTGL*LSMWTG 708
           LE P  +     ++K    L  WTG
Sbjct: 141 LESPRGKYEFSKYDKLKKKLEEWTG 165


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
 Frame = +1

Query: 457 RSIFSLQSLCHLCHEGRLLQNWNINAGWS-FTTGHLRYSSH*RCWRSTTGTSRWLRTTPC 633
           R+  SLQ +    +    LQ WN +  W    T +LR       +         +     
Sbjct: 97  RTKMSLQLVLAALYPPNKLQQWNEDLNWQPIATKYLRRYED-NIFLPEDCLLFTIELDRV 155

Query: 634 LEHPNTRNRIEAFEKTGL*LSMWTG 708
           LE P  +     ++K    L  WTG
Sbjct: 156 LESPRGKYEFSKYDKLKKKLEEWTG 180


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 63  ALSLANNGLDVKIISYVETDPLP 131
           ALSL +  L    + ++E +P P
Sbjct: 681 ALSLGSEALSAATVRFIEAEPQP 703


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 508 LLQNWNINAGWSFTTG 555
           +LQ+  +NA WS+ +G
Sbjct: 276 ILQSGTLNAPWSYMSG 291


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 508 LLQNWNINAGWSFTTG 555
           +LQ+  +NA WS+ +G
Sbjct: 276 ILQSGTLNAPWSYMSG 291


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 299 PAIPSLPVFRLYCM 340
           P IP LP+  +YC+
Sbjct: 783 PRIPILPMIPVYCV 796


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,632
Number of Sequences: 438
Number of extensions: 6480
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)