Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30624
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16570.1 68414.m01986 glycosyl transferase family 1 protein c...    69   3e-12
At1g67140.1 68414.m07638 expressed protein                             30   1.9  
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei...    29   4.5  

>At1g16570.1 68414.m01986 glycosyl transferase family 1 protein
           contains similarity to mannosyltransferase GI:1800223
           from Dictyostelium discoideum; contains Pfam glycosyl
           transferase, group 1 family protein domain PF00534
          Length = 465

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 9/214 (4%)
 Frame = +3

Query: 9   AKVVVLGDIGRSPRMQYHALSLANN-GLDVKIISYVETDPLPEVLNNPHITVIKL-HPFE 182
           A VVVLGD+GRSPRMQYHALSLA      V I++Y  + P   VLN+P I +  +  P  
Sbjct: 7   ACVVVLGDLGRSPRMQYHALSLARQASFQVDIVAYGGSIPHEAVLNHPSIHIHTMAQPRF 66

Query: 183 LKWGPVVL---KYIAKTLWQSVSLMFTYSLLEGATICWARTHPPYHPCQSFVCIAWFQRP 353
           +++ P +L     + K   Q   L++   +   A   +   +PP  P  + + + W    
Sbjct: 67  IQYFPKILYPVTLLLKAFIQFTMLLWFLFVKVPAPDIFLVQNPPSVP--TLIAVKWASSW 124

Query: 354 SL*SIGTTMHTQ*WP*LLNRTTCL*EWLEALKDFSVNLLTSISVSPMP*RKIAAELEHQC 533
              +     H   +  LL  +      L +L  +S N    ++   +   K       Q 
Sbjct: 125 RRAAFVVDWHNFGYT-LLALSLGRNNLLVSLYRWSENHYGKMATGSLCVTKAMQHELDQN 183

Query: 534 W----LVLYDRPPKIFKPLTLLEKHDWYVKMAQN 623
           W     VLYD+PP+ F+P  L E+H+ + ++ ++
Sbjct: 184 WGVRAKVLYDQPPEFFRPALLEERHELFCRVRKD 217



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 29/78 (37%), Positives = 52/78 (66%)
 Frame = +2

Query: 275 DYLLGQNPPAIPSLPVFRLYCMVSKAQFVIDWHNYAYSIMAMTLEPDHMLVRMARSTERF 454
           D  L QNPP++P+L   +      +A FV+DWHN+ Y+++A++L  +++LV + R +E  
Sbjct: 102 DIFLVQNPPSVPTLIAVKWASSWRRAAFVVDWHNFGYTLLALSLGRNNLLVSLYRWSENH 161

Query: 455 FGQSSHFNLCVTYAMKED 508
           +G+ +  +LCVT AM+ +
Sbjct: 162 YGKMATGSLCVTKAMQHE 179


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = -1

Query: 357 NWAFETMQYKRKTGKDGMAGGFWPNK*SHLPVRNR*TLSLHSAIKFWQCI 208
           +W  + ++Y +  G+DG+A   W +K S  P+ ++  LSL S I+  QC+
Sbjct: 658 DWFEDELRYFQG-GEDGLAPSVWESKVSSFPLDSQGMLSLLSVIQ--QCL 704


>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 758

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 296 PPAIPSLPVFRLY---CMVSKAQFVIDWHN 376
           PP IP+ P+ R Y     VS A FV  +HN
Sbjct: 60  PPLIPTFPIGRFYNHQVRVSAADFVPSYHN 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,669,144
Number of Sequences: 28952
Number of extensions: 424605
Number of successful extensions: 1004
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)