Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30623
         (789 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    24   1.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   1.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   2.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   6.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.5  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 199 WTSDTQGDGDEPAEGGDNYISPH-SPQ 276
           W  + +  G+  +EGG + ISP  SPQ
Sbjct: 297 WKKENKTKGEGGSEGGGDDISPQGSPQ 323


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 199 WTSDTQGDGDEPAEGGDNYISPH-SPQ 276
           W  + +  G+  +EGG + ISP  SPQ
Sbjct: 299 WKKENKTKGEGGSEGGGDDISPQGSPQ 325


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   PTHPIRLGLALNFSVFYYEILNSPDK 78
           P HP+R+   ++FS   Y+ + + D+
Sbjct: 376 PVHPVRVNTIISFSGERYDFVINADQ 401


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 1   PTHPIRLGLALNFSVFYYEILNSPDK 78
           P HP+R+   ++FS   Y+ + + D+
Sbjct: 376 PVHPVRVNTIISFSGERYDFVINADQ 401


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 435 FVSSLTVLYFCIYTGL 482
           +V ++ VLY C YT L
Sbjct: 171 YVQAIEVLYICSYTVL 186


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 348 DTGPDDVLECYSFSYKHR 295
           D GP+D  + Y    KHR
Sbjct: 189 DVGPEDGYKSYQCRTKHR 206


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,025
Number of Sequences: 336
Number of extensions: 3717
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)