Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30623
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 139 5e-34
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 128 7e-31
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 30 0.43
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch... 27 3.1
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 5.4
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 5.4
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 26 5.4
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 26 5.4
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 26 5.4
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 139 bits (336), Expect = 5e-34
Identities = 63/72 (87%), Positives = 70/72 (97%)
Frame = +1
Query: 1 PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLL
Sbjct: 167 PTHPIRLGLALNFSVFYYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLL 226
Query: 181 RDNLTLWTSDTQ 216
RDNLTLWTSD +
Sbjct: 227 RDNLTLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 128 bits (310), Expect = 7e-31
Identities = 58/72 (80%), Positives = 67/72 (93%)
Frame = +1
Query: 1 PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
PT P+RLGLALNFSVFYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLL
Sbjct: 166 PTDPMRLGLALNFSVFYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLL 225
Query: 181 RDNLTLWTSDTQ 216
RDNLTLWTSD +
Sbjct: 226 RDNLTLWTSDAE 237
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 29.9 bits (64), Expect = 0.43
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 223 GDEPAEGGDNYISPHSPQHTH 285
G P GG N +SP + +HTH
Sbjct: 443 GSPPVRGGKNVLSPEAKEHTH 463
>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 257
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 480 IQCKYRNTKPSKMTQTFNFRRNGKVRCERLLTFLQATARVG 358
I C +PSK TF FR + K+ CE L+ + R G
Sbjct: 61 IACTVSGPRPSK---TFAFRSSAKLNCEFRLSPFSTSVRQG 98
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 377 CKNVKSRSQRTFPFRLKLNVCVIFDGFVFL 466
CK +++ + R FP +C + GF FL
Sbjct: 310 CKLIRNLTNRLFPSISDSTICSLIGGFFFL 339
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 199 WTSDTQGDGDEPAEGGDNYISPHSPQHTHLFSS 297
W SDT +E A G N + S Q FSS
Sbjct: 384 WNSDTPKFSEENARGWCNVLDDESSQQNQNFSS 416
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 184 DNLTLWTSDTQGDGDEPAEGGDNYISPHSP 273
D+L W + G D P GG ++S H P
Sbjct: 28 DDLFHWQATIMGPADSPYAGGVFFLSIHFP 57
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 5.4
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +1
Query: 58 ILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGDG---D 228
+L + A ++ KQ + TL K I+QL+ L W +DTQ +
Sbjct: 310 MLKDGNNAEKIDKQLISNLFVSFLTLPRADTKRFE-ILQLISSVLD-W-NDTQREQTGLQ 366
Query: 229 EPAEGGDNYISPHSPQHTHLFSSVFIRKRVTFEN 330
P +N+ PHS LFS KR +F +
Sbjct: 367 RPGSSVNNWSIPHSASSNSLFSDHSFSKRRSFHD 400
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 26.2 bits (55), Expect = 5.4
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 103 FDDAIAELDTLNEDSYKDST-LIMQLLRDNLTLWTSDTQGDGDEPAEGGDNYISPHSPQH 279
F DA+ L + D +D L + + + WT D + + + GD+YI+ + H
Sbjct: 684 FCDALLSLLEIYRDLDEDDVQLSIGHIAQQMLDWT-DNEKLYERKTQTGDDYIALNHNVH 742
Query: 280 THLFSSVF 303
HL + +F
Sbjct: 743 LHLANMIF 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,928
Number of Sequences: 5004
Number of extensions: 60978
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -