Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30623
(789 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 146 2e-35
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 146 2e-35
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 144 9e-35
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 143 2e-34
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 142 4e-34
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 140 1e-33
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 128 7e-30
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 73 3e-13
04_04_0260 + 23996775-23996865,23997031-23997566,23998407-239988... 29 5.6
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573... 29 5.6
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 146 bits (354), Expect = 2e-35
Identities = 70/81 (86%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Frame = +1
Query: 1 PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
PTHPIRLGLALNFSVFYYEILNSPDKAC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLL
Sbjct: 166 PTHPIRLGLALNFSVFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLL 225
Query: 181 RDNLTLWTSD-TQGDGDEPAE 240
RDNLTLWTSD T+ GDE E
Sbjct: 226 RDNLTLWTSDLTEDGGDEVKE 246
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 146 bits (353), Expect = 2e-35
Identities = 67/77 (87%), Positives = 72/77 (93%)
Frame = +1
Query: 1 PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL E+SYKDSTLIMQLL
Sbjct: 176 PTHPIRLGLALNFSVFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLL 235
Query: 181 RDNLTLWTSDTQGDGDE 231
RDNLTLWTSD Q DG +
Sbjct: 236 RDNLTLWTSDMQDDGGD 252
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 144 bits (348), Expect = 9e-35
Identities = 67/76 (88%), Positives = 70/76 (92%)
Frame = +1
Query: 4 THPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 183
THPIRLGLALNFSVFYYEILNSPD+AC LAKQAFDDAIAELDTL E+SYKDSTLIMQLLR
Sbjct: 172 THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLR 231
Query: 184 DNLTLWTSDTQGDGDE 231
DNLTLWTSD DG +
Sbjct: 232 DNLTLWTSDNAEDGGD 247
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 143 bits (346), Expect = 2e-34
Identities = 65/77 (84%), Positives = 71/77 (92%)
Frame = +1
Query: 1 PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELD+L E+SYKDSTLIMQLL
Sbjct: 149 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEESYKDSTLIMQLL 208
Query: 181 RDNLTLWTSDTQGDGDE 231
RDNLTLWTSD DG +
Sbjct: 209 RDNLTLWTSDANDDGGD 225
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 142 bits (343), Expect = 4e-34
Identities = 66/77 (85%), Positives = 71/77 (92%)
Frame = +1
Query: 1 PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLL
Sbjct: 172 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLL 231
Query: 181 RDNLTLWTSDTQGDGDE 231
RDNLTLWTSD D E
Sbjct: 232 RDNLTLWTSDISEDTAE 248
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 140 bits (339), Expect = 1e-33
Identities = 64/70 (91%), Positives = 69/70 (98%)
Frame = +1
Query: 1 PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQAFD+AI+ELDTL+E+SYKDSTLIMQLL
Sbjct: 390 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLL 449
Query: 181 RDNLTLWTSD 210
RDNLTLWTSD
Sbjct: 450 RDNLTLWTSD 459
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 128 bits (308), Expect = 7e-30
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +1
Query: 1 PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
PT PIRLGLALN SVFY EI+NSPDKACQLAK AFD+A+AEL +L+E++YKDSTLIMQLL
Sbjct: 156 PTDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLL 215
Query: 181 RDNLTLWTSDTQGDGDEPAEGGD 249
RDNL LW SD D D+ E D
Sbjct: 216 RDNLALWNSDMADDADDIRERTD 238
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/55 (56%), Positives = 44/55 (80%)
Frame = +1
Query: 55 EILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQG 219
EI+NSP++A Q+AKQA D+A AE+++ + YKDS L+MQLL++NL LWTS+ G
Sbjct: 163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELTG 217
>04_04_0260 +
23996775-23996865,23997031-23997566,23998407-23998892,
23998989-23999152,23999220-23999281,23999753-23999907,
24000625-24000738,24001701-24002233,24002512-24002609,
24003108-24003398,24003764-24003830,24003905-24003983
Length = 891
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 208 DTQGDGDEPAEGGDNYISPHSPQHTHLFSSVFI 306
D Q DG+E +G D + H +H LFSS+ I
Sbjct: 334 DMQIDGNE--DGADKSVEEHPTKHRRLFSSIDI 364
>03_06_0311 +
33054022-33054118,33056109-33056353,33057058-33057398,
33057488-33057538,33057623-33057695,33058229-33058333,
33060124-33060206,33061209-33061249,33061659-33063120,
33063368-33064847,33064958-33065122,33065232-33065424,
33065502-33065613,33065702-33065849,33065951-33066148,
33066234-33066512,33066612-33066773,33066872-33067090,
33067481-33067612
Length = 1861
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 341 PVSSPKPTRAVACKNVKSRS 400
PV+S +P RA AC N K +S
Sbjct: 387 PVASKRPKRAAACSNFKEKS 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,820,400
Number of Sequences: 37544
Number of extensions: 384017
Number of successful extensions: 986
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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