Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30623
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   4e-30
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     128   7e-30
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 31   1.1  
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)                 28   9.9  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  128 bits (310), Expect = 4e-30
 Identities = 61/78 (78%), Positives = 70/78 (89%), Gaps = 1/78 (1%)
 Frame = +1

Query: 1   PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
           PT PIRLGLALNFSVF+YEI  + ++AC+LAKQAFDDAIAELD+LNED YKDSTLIMQLL
Sbjct: 232 PTDPIRLGLALNFSVFHYEIQENQEEACKLAKQAFDDAIAELDSLNEDQYKDSTLIMQLL 291

Query: 181 RDNLTLWTSDTQGD-GDE 231
           RDNLTLW+S+ Q D GD+
Sbjct: 292 RDNLTLWSSENQEDQGDD 309



 Score =  123 bits (297), Expect = 1e-28
 Identities = 62/93 (66%), Positives = 70/93 (75%), Gaps = 2/93 (2%)
 Frame = +1

Query: 1   PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
           PT PIRLGLALNFSVFYYEI+    +AC LAK+AFDDAIAELDTL+ED YKDSTLIMQLL
Sbjct: 143 PTDPIRLGLALNFSVFYYEIVEDSKQACDLAKKAFDDAIAELDTLSEDQYKDSTLIMQLL 202

Query: 181 RDNLTLWTSDTQG--DGDEPAEGGDNYISPHSP 273
           RDNLT+     Q   +  E AE GD  ++P  P
Sbjct: 203 RDNLTVVEKALQAYKEAKEAAETGDGKLAPTDP 235


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  128 bits (308), Expect = 7e-30
 Identities = 58/77 (75%), Positives = 67/77 (87%)
 Frame = +1

Query: 1   PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLL 180
           P+HPIRLGLALNFSVFYYEI N P +AC+LAK+AFDDAIA LD L ++SYKDSTLIMQLL
Sbjct: 170 PSHPIRLGLALNFSVFYYEIENKPPEACKLAKEAFDDAIAVLDNLKDESYKDSTLIMQLL 229

Query: 181 RDNLTLWTSDTQGDGDE 231
           RDNLTLWTS+   +G +
Sbjct: 230 RDNLTLWTSEQDQEGQD 246


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 106 DDAIAELDTLNEDSYKDSTLIMQL---LRDNLTLWTSDTQGDGDEPAEG 243
           DD   + D  ++DS  + +   QL   L+  + LW S TQGD D  A G
Sbjct: 850 DDDDFDTDEWSDDSDAEGSAAGQLKLCLKREILLWKSGTQGDADRRATG 898


>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 743 IFWCQCFGYSPFKTL 699
           + WC+C+GY+P  TL
Sbjct: 537 MIWCRCYGYTPTPTL 551


>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
 Frame = +1

Query: 199 WTSDTQGDGDEPAEGGDNYISP------HSPQHTHLFSSVFIRKRVTFENVVWPGIITEA 360
           WT  T+G  + PA  GD   SP       SPQ T+   S    ++        PG++ + 
Sbjct: 464 WTGATKGQANSPANAGDACRSPLVKQLQRSPQLTNEQPSSPTFRKAGGVCTWTPGVVGQL 523

Query: 361 DASRRL*KC*KSFAADLPVPSKIKCLCHL*RF-CISV 468
              +R  +  +  A++       + LCH  R  C  V
Sbjct: 524 HREKRPVRSLRKMASEDNTCLSSRMLCHTSRIQCYKV 560


>SB_3514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 419 GTGRSAANDF*HFYKRRLASASVMIPGQTTFSNVTRFLIN 300
           GT R    +F HF++   A  ++ + G T  S +TR L+N
Sbjct: 194 GTSRFPEQNFDHFFQYSTAVLALCVSGYTHASFLTRPLVN 233


>SB_50016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2065

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 380  YKRRLASASVMIPGQTTFSNVT 315
            +KR     SV +PGQTTFS+VT
Sbjct: 1345 WKRTQYIWSVALPGQTTFSDVT 1366


>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
          Length = 983

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 49  YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQGD 222
           YY I  +  K      Q FDD    +   +ED+ +D+T  ++L+       T+D  GD
Sbjct: 505 YYNIPYNKPKKNDFKLQLFDDYKQAVTQASEDTLRDATTAIELMNAP----TTDVHGD 558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,042,863
Number of Sequences: 59808
Number of extensions: 455605
Number of successful extensions: 1138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)