Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30623
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -1

Query: 396 RLLTFLQATARVGFGDDTGPDDVLEC 319
           RL T LQAT   G   +  P DV EC
Sbjct: 131 RLNTRLQATLNCGLRLEKFPFDVQEC 156


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 348 DTGPDDVLECYSFSYKHR 295
           D GP+D  + Y    KHR
Sbjct: 169 DVGPEDGYKTYQCRTKHR 186


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 268 SAARYSCRRPRQARRHRLE 212
           S  RYSC R R+ + ++ E
Sbjct: 268 SRKRYSCSREREQKSYKNE 286


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 629 SCGDRNVTWPTRL 591
           S  + N+TWP RL
Sbjct: 389 SVNESNITWPGRL 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,582
Number of Sequences: 438
Number of extensions: 3933
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)