Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30622
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    29   0.65 
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   0.65 
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    28   1.1  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   2.0  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   3.5  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    26   6.1  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    26   6.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.0  

>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 344 EEKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQ 493
           E+     S++   S++ KP E  AP S  +IK+D P N     N ++  Q
Sbjct: 336 EQSIDVSSDIGLRSDSSKPNE--APTSSENIKADQPENSTKQENPEEDMQ 383


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 170 KFSGSRKRASHRHDAGRVVCRIIIVSDAHLEELLESEGINQLQQQ 304
           K+S S K    +  +  + C  +++S AH+  LL+  GI Q  Q+
Sbjct: 361 KYSFSSKNVQSKEKSKIMSCFTLLISCAHITYLLDCHGIIQFYQK 405


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 344 EEKPQTESEVLATSENPKPTESAAPLS--DISIKSDTPHNKEASVNKQKRPQRLKSMWLV 517
           +++ +T    L   E    T+S A L   D   ++D+  N+E  + K+K  + L   WL 
Sbjct: 3   QKETKTSQIALVDGEKLSITDSFASLFTLDEEEENDSVDNEEIKLTKEKHEKLLLLFWLH 62

Query: 518 CCCP 529
           C  P
Sbjct: 63  CKFP 66


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 452 VVYLILWRYRSKAPPI-L*ALDFQMWPKLRTPFEVFLQA*AER*PSEVSAFV 300
           V+YL +W     +  + + +L +Q W KL  P  VFL       P E   F+
Sbjct: 39  VMYLTMWNSDLNSEALDVNSLQWQTWAKLNDPSIVFLNVSNHASPDEKVPFI 90


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 416 PLSDISIKSDTPHNKEASVNKQKRPQRLKS 505
           P SD SIKS     +E+S +++K P   +S
Sbjct: 182 PESDQSIKSSRNRRRESSFSREKNPDLTRS 211


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 344 EEKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLKSMWLVCC 523
           +++ QT S   A  + P+  E  AP +    + DT    + + +K+K  ++     L CC
Sbjct: 378 QQQQQTSS---AQQQQPQRVEQPAPQTTQPTQVDTQQAAKPAPSKEKSRKKFHLRLLSCC 434


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +2

Query: 350 KPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLKSMWL 514
           K  + SE    S+N   TESA      SI  DTP     ++NK KR   + + WL
Sbjct: 364 KSASSSETFVGSKNVDLTESAFD----SIP-DTPTKIITNINKLKRNYTITNNWL 413


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 365  SEVLATSENPKPTESAAPLSDISIKSDTPHN 457
            S  + +S     + SAA  +D S+ +DTP N
Sbjct: 1129 SSTVTSSATASSSSSAATTADSSVTTDTPSN 1159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,460,392
Number of Sequences: 5004
Number of extensions: 45159
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)