Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30622
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 29 4.3
AF047663-3|AAC04452.1| 137|Caenorhabditis elegans Hypothetical ... 28 5.7
U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical pr... 28 7.5
U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical pr... 28 7.5
DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin p... 28 7.5
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 28 7.5
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 28 7.5
AF038623-8|AAB94160.2| 631|Caenorhabditis elegans Hypothetical ... 28 7.5
Z81495-6|CAB04062.1| 164|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z68299-2|CAA92611.2| 344|Caenorhabditis elegans Hypothetical pr... 27 9.9
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 27 9.9
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 27 9.9
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 27 9.9
>Z93379-4|CAB07588.1| 306|Caenorhabditis elegans Hypothetical
protein F21H7.5 protein.
Length = 306
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 374 LATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRPQRLK 502
L ++N PT + A +SD+SIKSD+ E S + P + K
Sbjct: 142 LNKAKNLCPTVNQADVSDVSIKSDSGEKSEKSKALKLVPNQSK 184
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 344 EEKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASV 472
EEK + E +V PKP S P D+ K+D K+ ++
Sbjct: 207 EEKKEDEKKVEPKPGEPKPHISIEPPGDLMFKADQQEQKKLTL 249
>AF047663-3|AAC04452.1| 137|Caenorhabditis elegans Hypothetical
protein W09G12.9 protein.
Length = 137
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = -1
Query: 524 SNKLATLISAFVVVFVYLRTLLYCVVYLILWRYRSKAPPIL 402
+N+LA ++ +++ L +++C+++++ R RS PPIL
Sbjct: 8 TNELAVVL---LLIAAALLVVVFCLIWMLKCRKRSSQPPIL 45
>U64858-5|AAB18284.1| 409|Caenorhabditis elegans Hypothetical
protein C16D9.4 protein.
Length = 409
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +2
Query: 347 EKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQ 481
EKPQ S+V+ TS KP +S S S P N S+ KQ
Sbjct: 85 EKPQRSSKVINTSSESKPAQSQIAASQRS-SPGYPQNL-TSIGKQ 127
>U10438-1|AAA19083.3| 524|Caenorhabditis elegans Hypothetical
protein B0280.5 protein.
Length = 524
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 519 QTSHIDFSLCGRFCLFTDASLLCGVSDFMEISLKG-AADSVGFGFSDVAKTSDSV*G-FS 346
Q H+D C +F D SL+C D+ + SLK D++ + +A S G FS
Sbjct: 423 QNGHVDIFECPSSLVFNDQSLIC---DYPQTSLKCLIEDTILIDETPIAAFDCSTDGLFS 479
Query: 345 SGL 337
GL
Sbjct: 480 DGL 482
>DQ340624-1|ABC65812.1| 524|Caenorhabditis elegans chondroitin
proteoglycan-2 protein.
Length = 524
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 519 QTSHIDFSLCGRFCLFTDASLLCGVSDFMEISLKG-AADSVGFGFSDVAKTSDSV*G-FS 346
Q H+D C +F D SL+C D+ + SLK D++ + +A S G FS
Sbjct: 423 QNGHVDIFECPSSLVFNDQSLIC---DYPQTSLKCLIEDTILIDETPIAAFDCSTDGLFS 479
Query: 345 SGL 337
GL
Sbjct: 480 DGL 482
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 417 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 307
GA +S GF +TS S F SG GG+ T GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -3
Query: 417 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 307
GA +S GF +TS S F SG GG+ T GFG
Sbjct: 360 GATESSGF---PTKETSTSGGTFGSGFGGKPTSTGFG 393
>AF038623-8|AAB94160.2| 631|Caenorhabditis elegans Hypothetical
protein T08B6.4 protein.
Length = 631
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 383 SENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRP 490
S N +S + D+ +++ P N E ++ K KRP
Sbjct: 158 SNNMTGKDSNKDVKDVDVEAANPENPETNICKDKRP 193
>Z81495-6|CAB04062.1| 164|Caenorhabditis elegans Hypothetical
protein F08G2.6 protein.
Length = 164
Score = 27.5 bits (58), Expect = 9.9
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 380 TSENP-KPTESAAPLSDISIKSDTPHNK-EASVNKQKRPQRLKSMWLVCCCP*CVRTDIT 553
T+ NP P +AA L S S H EA K+ R + +W +CC C DI
Sbjct: 18 TNANPIHPVPNAAFLPYRSCGSHLVHRAFEACSGKKDRSSDV-DLWKMCCKDECTDLDI- 75
Query: 554 KEKQC 568
KE C
Sbjct: 76 KESLC 80
>Z81037-9|CAB02749.2| 425|Caenorhabditis elegans Hypothetical
protein C17E4.1 protein.
Length = 425
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 362 ESEVLATSENPKPTESAAPLSDISIKSDTPHNKEAS--VNKQKRPQR 496
E E T++ P P SAAP+S + KS T N++++ + +QK +R
Sbjct: 95 EPETAETAKTPSP--SAAPVSPVLEKSKTKTNQKSTTEIEQQKIVKR 139
>Z68299-2|CAA92611.2| 344|Caenorhabditis elegans Hypothetical
protein T04B2.4 protein.
Length = 344
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -1
Query: 542 FLRIRGSNKLATLISAFVVVFVYLRTLLYCVVYLILWRYRSKAPP 408
FL + +N + F+ V L YC ++++L K PP
Sbjct: 194 FLNVTMTNIFFVIGGVFLFVNCLFLVLTYCYLFIVLHERNKKTPP 238
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 417 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 307
G ++ G GF + G SSG GG GFG
Sbjct: 75 GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 417 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 307
G ++ G GF + G SSG GG GFG
Sbjct: 75 GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -3
Query: 417 GAADSVGFGFSDVAKTSDSV*GFSSGLGGEVTIGGFG 307
G ++ G GF + G SSG GG GFG
Sbjct: 75 GGGNTCGSGFGGGSTGGSPYGGASSGFGGSTATSGFG 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,647,822
Number of Sequences: 27780
Number of extensions: 255943
Number of successful extensions: 852
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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