Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30622
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46640.1 68418.m05744 DNA-binding family protein contains a A...    28   7.0  
At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domai...    28   7.0  
At2g25625.2 68415.m03071 expressed protein                             28   7.0  

>At5g46640.1 68418.m05744 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 386

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 347 EKPQTESEVLATSENPKPTESAAPLSDISIKSDTPHNKEASVNKQKRP 490
           +KP+  S  +A  +NP+P  + A + +    S  P ++ +  N+   P
Sbjct: 300 KKPKQSSVNIARGQNPEPASAPANMLNFGSVSQGPSSESSEENESGSP 347


>At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 793

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 368 EVLATSENPKPTESAAPLSDISIKSDTPHNKEASVN 475
           ++LA + +PKPT+++ P S     S +P +    VN
Sbjct: 39  QILAVATDPKPTQTSPPKSTTVNGSSSPSSASKVVN 74


>At2g25625.2 68415.m03071 expressed protein
          Length = 151

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/34 (50%), Positives = 19/34 (55%)
 Frame = -3

Query: 303 CCCN*LIPSDSNSSSKWASLTIMIRQTTRPASWR 202
           CC N L P DSNS+   ASL     +TT   SWR
Sbjct: 7   CCLN-LPPLDSNSAQSLASLL----KTTSKISWR 35


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,815,708
Number of Sequences: 28952
Number of extensions: 236752
Number of successful extensions: 707
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)