Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30621
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   4.4  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   4.4  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   4.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 399  LDKYLIPSSQTGESKVFYYKMKGDYH-RYLAEFATG 503
            +D+ L+P SQ   + VF  +    YH R +AE   G
Sbjct: 924  IDRVLVPGSQQNVAGVFNLRPATTYHLRIVAENEIG 959



 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 736 SEKRCPSFGDSFRRKAAFWRSPAGAVPG 653
           S+ R     D F +    W+  AG  PG
Sbjct: 694 SDARVECKADGFPKPQVTWKKAAGDTPG 721


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = -1

Query: 753 LCKFFPP---RSVVQVSAIASVERRPFGEARQARFRAVQDLVSRTRKKFEREV 604
           L  FF P    S+V +    +  RR    ARQ+R  AVQ    R     E  V
Sbjct: 202 LGSFFIPLLLMSLVYLEIYLATRRRLRERARQSRINAVQSTRHREADDAEESV 254


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = -1

Query: 753 LCKFFPP---RSVVQVSAIASVERRPFGEARQARFRAVQDLVSRTRKKFEREV 604
           L  FF P    S+V +    +  RR    ARQ+R  AVQ    R     E  V
Sbjct: 202 LGSFFIPLLLMSLVYLEIYLATRRRLRERARQSRINAVQSTRHREADDAEESV 254


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = -1

Query: 753 LCKFFPP---RSVVQVSAIASVERRPFGEARQARFRAVQDLVSRTRKKFEREV 604
           L  FF P    S+V +    +  RR    ARQ+R  AVQ    R     E  V
Sbjct: 202 LGSFFIPLLLMSLVYLEIYLATRRRLRERARQSRINAVQSTRHREADDAEESV 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,917
Number of Sequences: 438
Number of extensions: 4823
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)