Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30620
         (481 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.9  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    22   2.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   5.9  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +3

Query: 288 QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 395
           QG  G H  +      ++  G E  HL     GH P
Sbjct: 379 QGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEP 414


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = +3

Query: 288 QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 395
           QG  G H  +      ++  G E  HL     GH P
Sbjct: 327 QGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEP 362


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 207 IIHKFPDSNLMKSIIFVVAMSNWMESL 127
           II +F    L   +  VV +SNW E L
Sbjct: 239 IIARFNIERLCNGLKRVVKLSNWREPL 265


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 378 RQGHPPHHRRG 410
           RQG PPHH  G
Sbjct: 57  RQGIPPHHYGG 67


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 9   RRLSTSCVKSSVWRPDLRMFR 71
           R+++  C+KS  WR  L + +
Sbjct: 525 RKVTFQCLKSIAWRAFLAVLK 545


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,513
Number of Sequences: 336
Number of extensions: 3035
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)