Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30620
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 132 2e-32
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 132 2e-32
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 132 2e-32
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 1.9
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 4.5
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 7.8
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 7.8
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 132 bits (320), Expect = 2e-32
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 TPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIK 181
T EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIK
Sbjct: 115 TAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIK 174
Query: 182 FESGNLCMITGGRNLGRVGTIVSR 253
F++ M+TGGRN+GRVGTIV R
Sbjct: 175 FDTSAQVMVTGGRNMGRVGTIVHR 198
Score = 82.2 bits (194), Expect = 4e-17
Identities = 35/59 (59%), Positives = 49/59 (83%)
Frame = +1
Query: 259 HPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 435
H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 201 HLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 132 bits (320), Expect = 2e-32
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 TPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIK 181
T EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIK
Sbjct: 115 TAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIK 174
Query: 182 FESGNLCMITGGRNLGRVGTIVSR 253
F++ M+TGGRN+GRVGTIV R
Sbjct: 175 FDTSAQVMVTGGRNMGRVGTIVHR 198
Score = 83.0 bits (196), Expect = 2e-17
Identities = 35/59 (59%), Positives = 49/59 (83%)
Frame = +1
Query: 259 HPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 435
H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 201 HLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 132 bits (320), Expect = 2e-32
Identities = 61/84 (72%), Positives = 70/84 (83%)
Frame = +2
Query: 2 TPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIK 181
T EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIK
Sbjct: 115 TAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIK 174
Query: 182 FESGNLCMITGGRNLGRVGTIVSR 253
F++ M+TGGRN+GRVGTIV R
Sbjct: 175 FDTSAQVMVTGGRNMGRVGTIVHR 198
Score = 82.2 bits (194), Expect = 4e-17
Identities = 35/59 (59%), Positives = 49/59 (83%)
Frame = +1
Query: 259 HPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 435
H GSF+I+H+KD+ FATRL+NVF+IG+ K++ISLP+GKG++L+I EERD+R A K
Sbjct: 201 HLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRRALK 259
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 1.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 121 QSQRFHPVRHCNYED 165
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = -2
Query: 342 DYEHVVQPRGEGVSRGVLDVHNVEGAGMSPRDTMVPTRP----KLRPPVIIHKFPDSNLM 175
DY H RG +S ++DV ++ + + +P +P KLR + K D
Sbjct: 181 DYMH----RGRSISSPMIDVEHINSTAVPSKTKNLPEKPKRSHKLRNSITFAKIEDHPER 236
Query: 174 KS 169
KS
Sbjct: 237 KS 238
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -1
Query: 262 DVSAGHDGAHTPQVTASRDHTQVPGLKLDEVHNLRS 155
D+ + PQ+ T++P DE+HN+ S
Sbjct: 352 DLRTSETIGYPPQIVEGNYDTRLPSALPDEIHNVDS 387
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 259 VSAGHDGAHTPQVTASRDHTQVPGLKLDEVHNLRS 155
VS+ + +H+P+ S+ +T PGLK + + +
Sbjct: 309 VSSFNSDSHSPKDYISQSYTNEPGLKKESADSFNN 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,140
Number of Sequences: 5004
Number of extensions: 43842
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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