Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30620
(481 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 124 4e-29
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 124 5e-29
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 123 7e-29
04_04_0040 + 22322839-22324173 33 0.12
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378 31 0.64
12_02_0735 - 22636835-22639502,22639755-22640734 29 1.5
11_06_0087 - 19919224-19922304 29 1.5
05_02_0043 + 5964749-5966406,5966725-5966791,5967174-5967329,596... 29 1.5
04_03_1015 - 21734381-21736534 29 1.5
12_02_0759 - 22882435-22882731 29 2.0
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 2.0
01_05_0455 + 22387512-22387629,22388344-22388852 29 2.6
11_08_0084 + 28260647-28262575 28 3.4
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647... 28 3.4
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 4.5
04_04_0946 - 29579779-29580004,29580098-29580210 27 6.0
08_02_0757 + 20840885-20841281,20842937-20843025,20843132-208432... 27 7.9
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 27 7.9
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 124 bits (299), Expect = 4e-29
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = +2
Query: 8 EEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 187
E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+
Sbjct: 117 EDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFD 176
Query: 188 SGNLCMITGGRNLGRVGTIVSR 253
GN+ M+TGGRN GRVG I +R
Sbjct: 177 VGNVVMVTGGRNTGRVGVIKNR 198
Score = 85.8 bits (203), Expect = 2e-17
Identities = 38/69 (55%), Positives = 51/69 (73%)
Frame = +1
Query: 226 GACGHHRVPRRHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 405
G G + +H GSF+ +H++D+ GH FATRL NVF IGKG K ++SLP+GKGI+L+I
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNKPWVSLPKGKGIKLSII 249
Query: 406 EERDKRIAA 432
EE+ KR AA
Sbjct: 250 EEQRKRDAA 258
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 124 bits (298), Expect = 5e-29
Identities = 54/82 (65%), Positives = 68/82 (82%)
Frame = +2
Query: 8 EEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 187
E+AK+KLCKV+ V G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+
Sbjct: 133 EDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFD 192
Query: 188 SGNLCMITGGRNLGRVGTIVSR 253
GN+ M+TGGRN GRVG I SR
Sbjct: 193 VGNIVMVTGGRNTGRVGVIKSR 214
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/68 (51%), Positives = 48/68 (70%)
Frame = +1
Query: 226 GACGHHRVPRRHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 405
G G + +H GSF+ +H++D+ GH FATR+ NVF IGK K ++SLP+GKGI+L+I
Sbjct: 206 GRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERKPWVSLPKGKGIKLSII 265
Query: 406 EERDKRIA 429
EE KR A
Sbjct: 266 EEARKRNA 273
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 123 bits (297), Expect = 7e-29
Identities = 53/82 (64%), Positives = 68/82 (82%)
Frame = +2
Query: 8 EEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 187
E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+
Sbjct: 117 EDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFD 176
Query: 188 SGNLCMITGGRNLGRVGTIVSR 253
GN+ M+TGGRN GRVG I +R
Sbjct: 177 VGNVVMVTGGRNTGRVGVIKNR 198
Score = 85.4 bits (202), Expect = 2e-17
Identities = 38/69 (55%), Positives = 51/69 (73%)
Frame = +1
Query: 226 GACGHHRVPRRHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 405
G G + +H GSF+ +H++D+ GH FATRL NVF IGKG K ++SLP+GKGI+L+I
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSII 249
Query: 406 EERDKRIAA 432
EE+ KR AA
Sbjct: 250 EEQRKRDAA 258
>04_04_0040 + 22322839-22324173
Length = 444
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +3
Query: 258 TSRL--LR-HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 416
TSRL LR H H HG + RH++ +R R H L A G P + AG
Sbjct: 25 TSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVARATGVPMTSSKAAG 80
>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
Length = 477
Score = 30.7 bits (66), Expect = 0.64
Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +3
Query: 249 PAETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG--HPPHHRRGAGQA 422
P +RL RH G HG R + E + GH H G P HH RG GQA
Sbjct: 15 PEAHARLPRHAPPAGGHGRGGRGQ-EGPIAIAAGHGRGHRGGGHGGPASPRHHLRGRGQA 73
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 350 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 255
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 54 DLRMFRTW*RMMAA-PSAIQTHLSKSTIPSS*TLQLRRL 167
DL R W +A PS HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>05_02_0043 +
5964749-5966406,5966725-5966791,5967174-5967329,
5967782-5967865,5968020-5968073
Length = 672
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 276 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 431
H H G H H +H E +L +++ GH P+ R A Q H +
Sbjct: 325 HHGHTGHHIRHFLQLGWDYLHLTYKQEAANLGSSQNGHFPYRWRRASQYHEA 376
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 18 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 143
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>12_02_0759 - 22882435-22882731
Length = 98
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 303 THLRHEVEQRVHNRQGHEGVH-LAAARQGHPPHHRRGAGQAHRSQG 437
TH RH + +R R+G G L A R P H G G+ R +G
Sbjct: 42 THERHHLVERGQRRRGDRGAGVLGADRVEEGPQH--GGGERRRGRG 85
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 350 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 255
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>01_05_0455 + 22387512-22387629,22388344-22388852
Length = 208
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 293 SLMCTMSKEPGCLRGTRWCPHAPSYGLP 210
SL + EP CL W PH PS LP
Sbjct: 100 SLGLNLRLEPDCLPSYLWWPHHPSTQLP 127
>11_08_0084 + 28260647-28262575
Length = 642
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 300 RGVLDVHNVEGAGMSPRDTMVPTRPKLRPPVIIH 199
R V+D E + SPRD ++ ++RP V IH
Sbjct: 473 RNVMDESLQEDSSRSPRDEVLGNIRRMRPDVFIH 506
>04_01_0492 +
6476586-6476873,6477414-6477686,6477769-6477948,
6478436-6478696,6479171-6479303,6479404-6479494,
6479921-6480023,6480557-6480660,6480809-6480902,
6480985-6481140,6481224-6481286,6481388-6481453,
6481670-6481870,6481999-6482076,6482165-6482284,
6482382-6482462,6482548-6482633,6482920-6483031,
6483093-6483170,6483306-6483482
Length = 914
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 372 AARQGHPPHHRRGAG 416
AAR+GHPP H G G
Sbjct: 4 AARRGHPPPHENGVG 18
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 80 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 214
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>04_04_0946 - 29579779-29580004,29580098-29580210
Length = 112
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/44 (27%), Positives = 19/44 (43%)
Frame = +3
Query: 318 EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 449
EV++ H R+ H + R+ H HH + Q R A+
Sbjct: 54 EVDRAKHRRKKRAAAHAVSVRKEHRNHHHHHRHHHQQPQPRPAI 97
>08_02_0757 +
20840885-20841281,20842937-20843025,20843132-20843257,
20843617-20844333,20844420-20844630,20844739-20845238,
20845998-20846023,20846393-20846531,20846579-20846660,
20846990-20847153
Length = 816
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 240 VPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWMESLTLISGSG*RM 97
+P RP +RP + K P S SI+ S W E + L G+ R+
Sbjct: 461 IPERPMVRPYHVHSKDPCSFDAGSIVDAWWNSGWWEGIVLQQGNDRRL 508
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/56 (26%), Positives = 20/56 (35%)
Frame = +3
Query: 222 TWGVWAPSCPAETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH 389
TW CP T + R + T L ++ H+ H HLA GH
Sbjct: 104 TWNQNGEKCPDNTIPIRRTKEEDVMRATSLT-TFGKKTHDMSSHPHSHLAGVTSGH 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,743,172
Number of Sequences: 37544
Number of extensions: 388376
Number of successful extensions: 1348
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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