Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30620
(481 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 124 5e-29
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.86
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.5
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 28 4.6
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1) 27 6.1
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 27 8.0
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 27 8.0
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 124 bits (298), Expect = 5e-29
Identities = 53/84 (63%), Positives = 68/84 (80%)
Frame = +2
Query: 2 TPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIK 181
T EEAKYKL +V+RV G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IK
Sbjct: 539 TAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIK 598
Query: 182 FESGNLCMITGGRNLGRVGTIVSR 253
F++GN+ M+ GGRN+GRVG + R
Sbjct: 599 FDTGNMAMVVGGRNMGRVGMVTHR 622
Score = 105 bits (253), Expect = 1e-23
Identities = 46/71 (64%), Positives = 57/71 (80%)
Frame = +1
Query: 223 LGACGHHRVPRRHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 402
+G G +H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+RL+I
Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSI 672
Query: 403 AEERDKRIAAK 435
AEERD+RIA K
Sbjct: 673 AEERDRRIAEK 683
>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 234 WAPSCPAETSRLLRHCAHQGLHGTHLRHEVEQRV-HNRQG 350
WAP P E RL H+ H++H + +++ H + G
Sbjct: 22 WAPYRPLEVERLFAFSEHRASIAEHIKHAIAKQIKHAKSG 61
>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 324 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 416
+Q H+ G+ H GH HHRR +G
Sbjct: 41 DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71
>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 325 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 438
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 325 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 438
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +3
Query: 330 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 428
+VHN +G EGV +R GH H RG+ HR
Sbjct: 197 QVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +2
Query: 2 TPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIK 181
TP+ K C+V R++TGP +++ +G + +++ ++ + + + F
Sbjct: 291 TPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV--FPD 348
Query: 182 FESGNLCM 205
FE G CM
Sbjct: 349 FEKGVACM 356
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 303 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 431
THL E + + R+ G +AAA + P + R G +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273
>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.9 bits (59), Expect = 4.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 425 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEP 264
+ LSR + R+P P ++ +P P T + + +CPV + TMS P
Sbjct: 48 LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFP 96
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.9 bits (59), Expect = 4.6
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +2
Query: 8 EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 178
E+A +C++ R+ P+ LV G +++ I + Q+ + + +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030
Query: 179 KFESGNLCMITGGRNLGRV 235
K + NLC G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +3
Query: 234 WAPSCPAETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAAR 380
W+ S P + S H+ HG L ++V+ ++HNR G +A+
Sbjct: 765 WSQS-PTDMSISWEALPHKQAHGKLLGYKVQYQIHNRSASLGTSNGSAQ 812
>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
Length = 244
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +3
Query: 273 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 401
+H H+ HGTH +H V + H + V H HH
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 348 LADYEHVVQPRGEGVSRGVLDVHNVEGAGMSPRDTMV 238
L D+E V+P G+ +++ ++++N A M P T +
Sbjct: 1884 LQDFEEDVKPLGDIMTQATIEIYNTIVAKMLPTPTRI 1920
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1
Query: 451 PTARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRR 308
P P R +CP G C A +C+P C CR+ + + RR
Sbjct: 642 PQTANPMQRQSCP------GACASSCAPKCSPGC-CRILSATGQNRRR 682
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 312 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 443
RH + + NRQ H+ RQ H HRR + HR + +R
Sbjct: 160 RHRQKHQRRNRQKHQ----RRQRQEHQRRHRRQHQRRHRQKHQR 199
>SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 300 RGVLDVHNVEGAGMSPRDTMVPTRP 226
+GV +V+N E AG+SP ++ T P
Sbjct: 250 KGVENVYNKESAGISPETAVLNTSP 274
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 312 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 452
+H + ++VHN++GH G + +G QA + + R +G
Sbjct: 880 KHHIIRQVHNKEGHMGPTQVLSSVREKYWILKGGAQAKQEEFGRIIG 926
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -2
Query: 372 QRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSPRDTMVPTRPKLRPPVI 205
+R R AL + +P GEG G + V AG S DT+ P + PVI
Sbjct: 428 RRSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGVDTVPPLTRQATIPVI 483
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -2
Query: 372 QRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSPRDTMVPTRPKLRPPVI 205
+R R AL + +P GEG G + V AG S DT+ P + PVI
Sbjct: 1095 RRSTRGTALPGQDGEDRPSGEGRQSGGPGIQAVWEAGTSGVDTVPPLTRQATIPVI 1150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,286,192
Number of Sequences: 59808
Number of extensions: 414734
Number of successful extensions: 1428
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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