Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30620
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 121 3e-28
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 120 4e-28
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 120 4e-28
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 33 0.100
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 32 0.23
At1g14210.1 68414.m01682 ribonuclease T2 family protein contains... 30 0.93
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 1.2
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 29 1.2
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 1.6
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 1.6
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 29 2.1
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 2.8
At2g40760.1 68415.m05028 rhodanese-like domain-containing protei... 28 2.8
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 28 3.7
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote... 28 3.7
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 27 5.0
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa... 27 5.0
At2g38570.1 68415.m04738 expressed protein ; expression supporte... 27 5.0
At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger) fa... 27 6.5
At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger) fa... 27 6.5
At1g68670.1 68414.m07846 myb family transcription factor contain... 27 6.5
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 27 8.7
At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein c... 27 8.7
At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein c... 27 8.7
At3g63100.1 68416.m07087 glycine-rich protein 27 8.7
At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At2g28130.1 68415.m03417 expressed protein 27 8.7
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 121 bits (291), Expect = 3e-28
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +2
Query: 8 EEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 187
EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+
Sbjct: 117 EEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFD 176
Query: 188 SGNLCMITGGRNLGRVGTIVSR 253
GN+ M+TGGRN GRVG I +R
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNR 198
Score = 92.3 bits (219), Expect = 2e-19
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +1
Query: 226 GACGHHRVPRRHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 405
G G + +H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTII 249
Query: 406 EERDKRIAAK 435
EE KR+A++
Sbjct: 250 EEARKRLASQ 259
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 120 bits (290), Expect = 4e-28
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +2
Query: 8 EEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 187
EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+
Sbjct: 117 EEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFD 176
Query: 188 SGNLCMITGGRNLGRVGTIVSR 253
GN+ M+TGGRN GRVG I +R
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNR 198
Score = 92.3 bits (219), Expect = 2e-19
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +1
Query: 226 GACGHHRVPRRHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 405
G G + +H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTII 249
Query: 406 EERDKRIAAK 435
EE KR+A++
Sbjct: 250 EEARKRLASQ 259
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 120 bits (290), Expect = 4e-28
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +2
Query: 8 EEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFE 187
EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+LD+ KI++FIKF+
Sbjct: 117 EEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFD 176
Query: 188 SGNLCMITGGRNLGRVGTIVSR 253
GN+ M+TGGRN GRVG I +R
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNR 198
Score = 92.3 bits (219), Expect = 2e-19
Identities = 41/70 (58%), Positives = 54/70 (77%)
Frame = +1
Query: 226 GACGHHRVPRRHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIA 405
G G + +H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++SLP+GKGI+LTI
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTII 249
Query: 406 EERDKRIAAK 435
EE KR++A+
Sbjct: 250 EEARKRLSAQ 259
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 33.1 bits (72), Expect = 0.100
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 285 HQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 428
HQG+HG + H ++ + + H+G+H + GH H+ G G H+
Sbjct: 154 HQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQ 203
Score = 31.9 bits (69), Expect = 0.23
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 285 HQGLHGT--HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 428
HQG HG H H ++ + + H+G+H + GH H+ G G H+
Sbjct: 130 HQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQ 179
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +3
Query: 285 HQGLHGTHL--RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 425
HQ +HG RH ++ + + H+G+H + GH H+ G H
Sbjct: 202 HQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQGGHRIQHQGMHGMQH 250
Score = 27.5 bits (58), Expect = 5.0
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 285 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAV 449
HQG HG ++H Q +H Q H+G H + GH H+ G H QGR +
Sbjct: 170 HQGGHG--MQH---QGMHGMQ-HQGGHGMEHQGGHGMQHQDMHGMQH--QGRHGM 216
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 285 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 440
HQG HG ++H Q +H Q H+G H + GH H+ G H+ R
Sbjct: 194 HQGGHG--MQH---QDMHGMQ-HQGRHGMQHQGGHEMQHQGMHGMQHQGGHR 239
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 31.9 bits (69), Expect = 0.23
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1
Query: 187 VRELVYDHGRP*LGACGHHRVPRRHPGSFDIVHIKDSTGHTFAT 318
VRE++ D GR G H + P + DI+HIK +TF T
Sbjct: 166 VREVIEDEGRRTAGIFSHFQRPNLETNA-DIIHIKMLRNNTFVT 208
>At1g14210.1 68414.m01682 ribonuclease T2 family protein contains
similarity to RNase GI:7768564 from [Nicotiana tabacum];
contains Pfam profile PF00445: Ribonuclease T2 family
Length = 247
Score = 29.9 bits (64), Expect = 0.93
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 165 LWTSSSLSPGTCV*SREAVTWGVWAPSCPAETSRLLRHCAHQGLHGTHLRHEVEQRVHNR 344
L+ S +S C ++ WGVWA CP+ + L H HGT ++ +Q + R
Sbjct: 81 LFDISKISDLVCQMEKKWTEWGVWA--CPSNETNLWEH--EWNKHGTCVQSIFDQHSYFR 136
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 350 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 255
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -2
Query: 306 VSRGVLDVHNVEGAGMSPRDTMVPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWMESL 127
+ RG L++ V+ + D M+ +I+ K P+ +S++F M +W+ SL
Sbjct: 241 MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR--QSMMFSATMPSWIRSL 298
Query: 126 T 124
T
Sbjct: 299 T 299
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 350 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 255
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 350 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 255
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 381 QGHPPHHRRGAGQAHRSQG 437
QGHPPH G H++QG
Sbjct: 132 QGHPPHPMHHQGMMHQAQG 150
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 350 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLRGTRWCPHAPSY 219
PL NT+ +++A PVE + C +S + G L A S+
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASF 413
>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
contains rhodanese-like domain PF00581
Length = 474
Score = 28.3 bits (60), Expect = 2.8
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Frame = -2
Query: 372 QRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSPRDTMVPTRPKLRPPVIIHKF 193
QRDVRL L E V P E + G + AG R KL+ ++
Sbjct: 164 QRDVRLNGLRQVETPVSPEQEAIHHGHSSSSPL-AAGEDAPFRWDHVRVKLKKEIVTLGI 222
Query: 192 PDSNLMKSIIFVVAMSNWMESLTLISGSG*RM--VRPSCVTKYGTFLGPV 49
P + ++ + V+ W E LIS + VR + T+ G F G V
Sbjct: 223 PSVSPIERVGTYVSPEEWNE---LISDPETVVIDVRNTYETRIGKFKGAV 269
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -2
Query: 306 VSRGVLDVHNVEGAGMSPRDTMVPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWMESL 127
+ RG L++ V+ + D M+ +I+ K P +S++F M +W+ SL
Sbjct: 253 MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKR--QSMMFSATMPSWIRSL 310
Query: 126 T 124
T
Sbjct: 311 T 311
>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
kinase, putative
Length = 658
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 83 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 214
H+ + +P ++N+ I+LDI++ I F NL +TG
Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 27.5 bits (58), Expect = 5.0
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 256 RHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 372
R P +V + HT A T NNVF G+GT + +
Sbjct: 323 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 312
Score = 27.5 bits (58), Expect = 5.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 470 KVYCP*PYCAATLAAMRLSRSS 405
+VYCP P C++ ++ +LS S+
Sbjct: 247 RVYCPNPLCSSLMSVTKLSNST 268
>At2g38570.1 68415.m04738 expressed protein ; expression supported
by MPSS
Length = 302
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 158 TKIMDFIKFESGNLCMITGGRNLGRVGT 241
T I+ +IK G + GGRN+G+V T
Sbjct: 196 TYILVYIKISVGYRVVTPGGRNIGKVST 223
>At5g60250.1 68418.m07552 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 655
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 470 KVYCP*PYCAATLAAMRLSRSS 405
+VYCP P C+A ++ ++S S+
Sbjct: 384 RVYCPYPRCSALMSKTKISESA 405
>At3g45580.1 68416.m04923 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 408
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 470 KVYCP*PYCAATLAAMRLSRSS 405
+VYCP P C++ ++ +LS S+
Sbjct: 257 RVYCPNPRCSSLMSVTKLSNST 278
>At1g68670.1 68414.m07846 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 354
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -1
Query: 313 RRCVPWSP*CAQCRRSRDVSAGHDGAHTPQVTASRDHTQVPGLKLDEV 170
RRC WSP RR + G+H RDH +V GL DEV
Sbjct: 217 RRC--WSP--ELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEV 260
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -3
Query: 383 LPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLRGTRWCPH 231
LP+ + Y LPI+ L+ KVCP + L T G + T PH
Sbjct: 264 LPKNQKNYC---LPIVLEFCKLLRKVCPDQKLYVTCRNTLGSMLETFDNPH 311
>At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 232 CGHHRVPRRHPGSFDIVHI 288
CG HR P +H SFD +
Sbjct: 137 CGSHRYPEKHECSFDFKEV 155
>At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 232 CGHHRVPRRHPGSFDIVHI 288
CG HR P +H SFD +
Sbjct: 137 CGSHRYPEKHECSFDFKEV 155
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/55 (34%), Positives = 20/55 (36%)
Frame = +3
Query: 276 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 440
HC H HG H H GH+ H GH H G G HR GR
Sbjct: 70 HCDH--CHGHGYGHG-----HREHGHDRGH------GHGRGHGHGHGHGHRRHGR 111
>At3g45555.1 68416.m04920 zinc finger (C3HC4-type RING finger)
family protein low similarity to UbcM4-interacting
protein 4 [Mus musculus] GI:13991706; contains Pfam
profiles PF00097: Zinc finger C3HC4 type (RING finger),
PF01485: IBR (In Between Ring fingers) domain
Length = 213
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 470 KVYCP*PYCAATLAAMRLSRSS 405
+ YCP P C+A ++ + LS+S+
Sbjct: 101 RFYCPNPRCSALMSKIELSKST 122
>At2g28130.1 68415.m03417 expressed protein
Length = 458
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 183 NLMKSIIFVVAMSNWMESLTLI 118
NL K IF+V NW+ S TL+
Sbjct: 390 NLFKMYIFLVLAENWLFSSTLV 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,606,839
Number of Sequences: 28952
Number of extensions: 260314
Number of successful extensions: 828
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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