Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30618
(741 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46782 Cluster: 40S ribosomal protein S5; n=150; Eukary... 206 6e-52
UniRef50_O65731 Cluster: 40S ribosomal protein S5; n=15; Eukaryo... 180 4e-44
UniRef50_Q9P3T6 Cluster: 40S ribosomal protein S5-B; n=3; Fungi/... 155 1e-36
UniRef50_UPI0000F2E821 Cluster: PREDICTED: hypothetical protein;... 145 1e-33
UniRef50_Q8SS72 Cluster: 40S RIBOSOMAL PROTEIN S5; n=1; Encephal... 107 2e-22
UniRef50_Q8TXJ3 Cluster: 30S ribosomal protein S7P; n=5; Archaea... 101 2e-20
UniRef50_Q3LVW8 Cluster: Ribosomal protein S5; n=1; Bigelowiella... 100 3e-20
UniRef50_Q8ZYK5 Cluster: 30S ribosomal protein S7P; n=13; Archae... 99 1e-19
UniRef50_Q8TRC2 Cluster: 30S ribosomal protein S7P; n=9; Euryarc... 88 2e-16
UniRef50_P15763 Cluster: 30S ribosomal protein S7P; n=15; Euryar... 84 3e-15
UniRef50_UPI00003C8539 Cluster: hypothetical protein Faci_030012... 83 5e-15
UniRef50_P14037 Cluster: 30S ribosomal protein S7P; n=3; Euryarc... 83 7e-15
UniRef50_O59230 Cluster: 30S ribosomal protein S7P; n=10; Archae... 81 2e-14
UniRef50_A7I4X5 Cluster: Ribosomal protein S7; n=1; Candidatus M... 80 6e-14
UniRef50_Q59EK8 Cluster: Ribosomal protein S5 variant; n=1; Homo... 62 2e-08
UniRef50_Q16KF0 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q06J33 Cluster: Chloroplast 30S ribosomal protein S7; n... 45 0.002
UniRef50_P19458 Cluster: Chloroplast 30S ribosomal protein S7; n... 44 0.004
UniRef50_P61841 Cluster: Chloroplast 30S ribosomal protein S7; n... 44 0.005
UniRef50_O93636 Cluster: 30S ribosomal protein S7P; n=1; Methano... 40 0.049
UniRef50_P49495 Cluster: Chloroplast 30S ribosomal protein S7; n... 38 0.26
UniRef50_O13744 Cluster: Mitochondrial ribosomal protein subunit... 37 0.60
UniRef50_Q97SQ4 Cluster: 30S ribosomal protein S7; n=211; Bacter... 36 0.79
UniRef50_Q4P8U6 Cluster: Putative uncharacterized protein; n=1; ... 36 1.4
UniRef50_Q4SMB1 Cluster: Chromosome 3 SCAF14553, whole genome sh... 35 1.8
UniRef50_A5VH21 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_UPI0000DB7910 Cluster: PREDICTED: similar to mitochondr... 34 4.2
UniRef50_O96282 Cluster: Putative uncharacterized protein PFB095... 33 7.4
UniRef50_Q83ES8 Cluster: 30S ribosomal protein S7; n=11; Bacteri... 33 9.7
>UniRef50_P46782 Cluster: 40S ribosomal protein S5; n=150;
Eukaryota|Rep: 40S ribosomal protein S5 - Homo sapiens
(Human)
Length = 204
Score = 206 bits (502), Expect = 6e-52
Identities = 111/173 (64%), Positives = 121/173 (69%)
Frame = +3
Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
SLQDYI+ +K KYLP + + KRF + P ++ HGR+NGKKLM VR
Sbjct: 34 SLQDYIA-VKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMM-MHGRNNGKKLMTVR 91
Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
IVKHAFEIIHLLTGENPLQ LV AI NSGPRED VNQA
Sbjct: 92 IVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 151
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
WLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDELERVAKSNR
Sbjct: 152 WLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>UniRef50_O65731 Cluster: 40S ribosomal protein S5; n=15;
Eukaryota|Rep: 40S ribosomal protein S5 - Cicer
arietinum (Chickpea) (Garbanzo)
Length = 197
Score = 180 bits (437), Expect = 4e-44
Identities = 97/173 (56%), Positives = 115/173 (66%)
Frame = +3
Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
SL DYI + Y+P + + KRF + P +L HGR+NGKKLMAVR
Sbjct: 26 SLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLM-MHGRNNGKKLMAVR 84
Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
I+KHA EIIHLLT +NP+Q +V A+ NSGPRED VNQA
Sbjct: 85 IIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 144
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
+LL TGAREAAFRNIK+IAEC+ADELINAAKGSS+SYAIKKKDE+ERVAK+NR
Sbjct: 145 YLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197
>UniRef50_Q9P3T6 Cluster: 40S ribosomal protein S5-B; n=3;
Fungi/Metazoa group|Rep: 40S ribosomal protein S5-B -
Schizosaccharomyces pombe (Fission yeast)
Length = 203
Score = 155 bits (376), Expect = 1e-36
Identities = 79/126 (62%), Positives = 92/126 (73%)
Frame = +3
Query: 321 HGRDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXX 500
+GR+NGKKL+A RIVKHAFEII LLT +NPLQ LV A+ GPRED
Sbjct: 78 NGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQA 137
Query: 501 XXXXXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELER 680
VNQA L+ GAREAAFRN+K+I+EC+A+E+INAAKGSS+SYAIKKKDELER
Sbjct: 138 VDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELER 197
Query: 681 VAKSNR 698
VAKSNR
Sbjct: 198 VAKSNR 203
>UniRef50_UPI0000F2E821 Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 280
Score = 145 bits (351), Expect = 1e-33
Identities = 73/107 (68%), Positives = 78/107 (72%)
Frame = +3
Query: 378 EIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAFWLLCTG 557
++ HLL +NPLQ LV AI NSGPRED VNQA WLLCTG
Sbjct: 174 QLQHLLLAQNPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTG 233
Query: 558 AREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
AREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDELERVAKSNR
Sbjct: 234 AREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 280
>UniRef50_Q8SS72 Cluster: 40S RIBOSOMAL PROTEIN S5; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S5 -
Encephalitozoon cuniculi
Length = 208
Score = 107 bits (258), Expect = 2e-22
Identities = 57/126 (45%), Positives = 76/126 (60%)
Frame = +3
Query: 321 HGRDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXX 500
HGR++GKK +A+ I + A IIH +T +NPLQ LV AI NSGPRED
Sbjct: 83 HGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPREDTARIGRAGSMRRTS 142
Query: 501 XXXXXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELER 680
++ A L G R A+FRN T+AE +A+ELI A+ S +SYA+ KK E+ER
Sbjct: 143 VDVSPLKRISIAISNLSAGIRNASFRNRITLAEAIANELIAASTNSQNSYAVNKKKEIER 202
Query: 681 VAKSNR 698
+A+SNR
Sbjct: 203 IAQSNR 208
>UniRef50_Q8TXJ3 Cluster: 30S ribosomal protein S7P; n=5;
Archaea|Rep: 30S ribosomal protein S7P - Methanopyrus
kandleri
Length = 197
Score = 101 bits (242), Expect = 2e-20
Identities = 63/172 (36%), Positives = 96/172 (55%)
Frame = +3
Query: 183 LQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVRI 362
L+DYI LK YLP + KRF + VP + + ++ GKK +A I
Sbjct: 31 LKDYIC-LK---PMYLPHTGGRHAKKRFAKAEVPIVERLINRVMRTE-KNTGKKHLAYNI 85
Query: 363 VKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAFW 542
VK AF+IIH TGENP+Q LV A+ N+ PRE+ ++ A
Sbjct: 86 VKRAFDIIHERTGENPIQVLVQALENAAPREETTTIIYGGISYHEAVDSSPQRRLDIALR 145
Query: 543 LLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
L+ GA++ AFRN K I EC+A+E+I AA+ ++ ++I++K+E+ER+A++ R
Sbjct: 146 LITEGAQQRAFRNPKPIEECLAEEIIAAARYDTECHSIRRKEEIERIAEAAR 197
>UniRef50_Q3LVW8 Cluster: Ribosomal protein S5; n=1; Bigelowiella
natans|Rep: Ribosomal protein S5 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 207
Score = 100 bits (240), Expect = 3e-20
Identities = 49/120 (40%), Positives = 73/120 (60%)
Frame = +3
Query: 327 RDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXX 506
R++GKK+ + IVKHAF ++H TG+NP+Q LV AI N P ED
Sbjct: 84 RNSGKKIKTIAIVKHAFYLLHKTTGKNPIQLLVDAISNCAPHEDSLMLSNSGQKKREAVD 143
Query: 507 XXXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVA 686
++QA + + G ++AAF+N K+I+ + DE++NAA+ S+ SYAIKKK +LE+ A
Sbjct: 144 VSPYRKISQAIYFIAVGTKKAAFKNPKSISIALHDEILNAARNSNTSYAIKKKLDLEKNA 203
>UniRef50_Q8ZYK5 Cluster: 30S ribosomal protein S7P; n=13;
Archaea|Rep: 30S ribosomal protein S7P - Pyrobaculum
aerophilum
Length = 223
Score = 98.7 bits (235), Expect = 1e-19
Identities = 50/125 (40%), Positives = 71/125 (56%)
Frame = +3
Query: 324 GRDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXX 503
GR+ GKK A IVK AF++I+ TG+NPLQ + AI N+ PRE+
Sbjct: 99 GRNTGKKHKAYNIVKRAFDLIYYKTGKNPLQVFIDAIINTAPREEITRIIMGGIAYSVSV 158
Query: 504 XXXXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERV 683
++ A + GAR +F N K I EC+ADE+I AA SYA++K++ELER+
Sbjct: 159 DVSPQRRLDLALRWITEGARACSFNNPKPIEECLADEIIAAAANDPKSYAVRKREELERI 218
Query: 684 AKSNR 698
A ++R
Sbjct: 219 AAASR 223
>UniRef50_Q8TRC2 Cluster: 30S ribosomal protein S7P; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S7P -
Methanosarcina acetivorans
Length = 189
Score = 88.2 bits (209), Expect = 2e-16
Identities = 46/123 (37%), Positives = 70/123 (56%)
Frame = +3
Query: 330 DNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXX 509
+ GKK + +R V+ AF+I++ T +NP+Q LV AI N+GPRE+
Sbjct: 67 NTGKKQVTLRAVEEAFDIVNKKTKQNPIQVLVDAIANAGPREEVVRLKYGGISVPKAVDT 126
Query: 510 XXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAK 689
V+ A + G AAF++ +++AEC+A ELI AA + S++I +KD ERVAK
Sbjct: 127 APQRRVDTALRYISMGTNAAAFKSKRSVAECLATELIGAANRDTKSFSINRKDAKERVAK 186
Query: 690 SNR 698
+ R
Sbjct: 187 AAR 189
>UniRef50_P15763 Cluster: 30S ribosomal protein S7P; n=15;
Euryarchaeota|Rep: 30S ribosomal protein S7P -
Halobacterium salinarium (Halobacterium halobium)
Length = 210
Score = 84.2 bits (199), Expect = 3e-15
Identities = 47/125 (37%), Positives = 68/125 (54%)
Frame = +3
Query: 324 GRDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXX 503
G + GKK A++IV+ AF+I+H T ENP+Q LV+A+ N+ PRE+
Sbjct: 86 GANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPREETVRLKYGGISVPQAV 145
Query: 504 XXXXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERV 683
V+QA L GA A+F+ AE +A++L AA + +YAI +K E ERV
Sbjct: 146 DTAPQRRVDQALKFLADGAHSASFKTPTDAAEALANQLAGAADYNVQTYAIGQKKEKERV 205
Query: 684 AKSNR 698
A + R
Sbjct: 206 AAAAR 210
>UniRef50_UPI00003C8539 Cluster: hypothetical protein Faci_03001272;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001272 - Ferroplasma acidarmanus fer1
Length = 182
Score = 83.4 bits (197), Expect = 5e-15
Identities = 44/121 (36%), Positives = 71/121 (58%)
Frame = +3
Query: 336 GKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXX 515
GKK A +++ AF+II T +NP+Q LV+AI NS PRE+
Sbjct: 62 GKKYSAYKVMSQAFDIIATKTKQNPVQILVSAIENSAPREEVTRLKYGGIAVPKSVDVSP 121
Query: 516 XXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSN 695
+++A + GA +A+F++ I +C+A+E++ AA+ ++S+AI KK+E+ERVA S
Sbjct: 122 SRRLDEALRNIARGATKASFKHKIHIQDCLANEILLAARNDANSFAISKKEEIERVAASA 181
Query: 696 R 698
R
Sbjct: 182 R 182
>UniRef50_P14037 Cluster: 30S ribosomal protein S7P; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S7P -
Methanococcus vannielii
Length = 194
Score = 83.0 bits (196), Expect = 7e-15
Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Frame = +3
Query: 330 DNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXX 509
+ GKK + I++ A I+ T ENP+Q +V A+ NSGPRE+
Sbjct: 71 NTGKKNEVLSIIEEALTIVENRTKENPIQVVVDALENSGPREETTRISYGGIAFLQSVDV 130
Query: 510 XXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGS-SDSYAIKKKDELERVA 686
++ AF + GA + A ++ K+IA+C+ADEL+ A+K S+A+KKK+E ERVA
Sbjct: 131 SPSRRLDTAFRNISLGASQGAHKSKKSIAQCLADELVAASKADMQKSFAVKKKEEKERVA 190
Query: 687 KSNR 698
+S R
Sbjct: 191 QSAR 194
>UniRef50_O59230 Cluster: 30S ribosomal protein S7P; n=10;
Archaea|Rep: 30S ribosomal protein S7P - Pyrococcus
horikoshii
Length = 218
Score = 81.4 bits (192), Expect = 2e-14
Identities = 47/126 (37%), Positives = 65/126 (51%)
Frame = +3
Query: 321 HGRDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXX 500
H N KK+ A +VK AF+II TG+NP+Q LV AI N+ PRED
Sbjct: 93 HRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVA 152
Query: 501 XXXXXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELER 680
++ A + GA +R + AE +A+E+I AA SYA KK E+ER
Sbjct: 153 VDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIER 212
Query: 681 VAKSNR 698
+A+S+R
Sbjct: 213 IAESSR 218
>UniRef50_A7I4X5 Cluster: Ribosomal protein S7; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S7 -
Methanoregula boonei (strain 6A8)
Length = 204
Score = 79.8 bits (188), Expect = 6e-14
Identities = 43/123 (34%), Positives = 68/123 (55%)
Frame = +3
Query: 330 DNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXX 509
+ GKK +A+ IV+ AFE+I+ T NP++ LV AI N+GPRE+
Sbjct: 82 NTGKKQLAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDT 141
Query: 510 XXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAK 689
V+ A + +++ ++ K + +ADELI A+KG + Y++ KK+E ER+AK
Sbjct: 142 APLRRVDSAIGFIAEAVWKSSRKSKKPASAILADELIAASKGDAKCYSVGKKEEKERIAK 201
Query: 690 SNR 698
S R
Sbjct: 202 SAR 204
>UniRef50_Q59EK8 Cluster: Ribosomal protein S5 variant; n=1; Homo
sapiens|Rep: Ribosomal protein S5 variant - Homo sapiens
(Human)
Length = 107
Score = 61.7 bits (143), Expect = 2e-08
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = +3
Query: 321 HGRDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTA 431
HGR+NGKKLM VRIVKHAFEIIHLLTGE L LV A
Sbjct: 16 HGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRA 52
>UniRef50_Q16KF0 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 77
Score = 45.2 bits (102), Expect = 0.002
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +3
Query: 633 GSSDSYAIKKKDELERVAKSNR 698
GSS+SYAIKKKDELERVAKSNR
Sbjct: 56 GSSNSYAIKKKDELERVAKSNR 77
>UniRef50_Q06J33 Cluster: Chloroplast 30S ribosomal protein S7; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S7 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 159
Score = 44.8 bits (101), Expect = 0.002
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Frame = +3
Query: 336 GKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXX 515
G K +A +I+ + + I L+T ++P++ + A+ N P +
Sbjct: 34 GNKALARKIIYRSLKDIELVTKQDPIKIVEQAVSNVTPFVEIRSRRLGGSTTQIPVFINN 93
Query: 516 XXXVNQAF-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKS 692
V A WL +A N +I + ++ E++NA+ G + AIKK+DE+ R+A++
Sbjct: 94 ERGVTLAIRWLFQASKNKAG--NKYSIIKRLSSEIVNASNGMGE--AIKKRDEMHRMAEA 149
Query: 693 NR 698
N+
Sbjct: 150 NK 151
>UniRef50_P19458 Cluster: Chloroplast 30S ribosomal protein S7;
n=22; cellular organisms|Rep: Chloroplast 30S ribosomal
protein S7 - Guillardia theta (Cryptomonas phi)
Length = 156
Score = 44.0 bits (99), Expect = 0.004
Identities = 34/121 (28%), Positives = 60/121 (49%)
Frame = +3
Query: 336 GKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXX 515
GKK +A RI+ +AF+II TGE+ + +AI P +
Sbjct: 34 GKKHLAQRIIYNAFDIIKQRTGEDAILVFESAIKKVTPLVEVKARRIGGSTYQVPMEVRA 93
Query: 516 XXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSN 695
N A + ARE A K+++ +A+E+++AA + S I+K++E+ R+A++N
Sbjct: 94 FRGTNLALRWITKYARERAG---KSMSMKLANEIMDAANETGSS--IRKREEIHRMAEAN 148
Query: 696 R 698
+
Sbjct: 149 K 149
>UniRef50_P61841 Cluster: Chloroplast 30S ribosomal protein S7;
n=191; Magnoliophyta|Rep: Chloroplast 30S ribosomal
protein S7 - Arabidopsis thaliana (Mouse-ear cress)
Length = 155
Score = 43.6 bits (98), Expect = 0.005
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Frame = +3
Query: 333 NGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXX 512
+GKK +A +I+ A + I T NPL L AI G D
Sbjct: 33 HGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAI--RGVTPDIAVKARRVGGSTHQVPIE 90
Query: 513 XXXXVNQAF---WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERV 683
+A WLL +R+ RN+ A ++ EL++AAKGS D AI+KK+E R+
Sbjct: 91 IGSTQGKALAIRWLL-GASRKRPGRNM---AFKLSSELVDAAKGSGD--AIRKKEETHRM 144
Query: 684 AKSNR 698
A++NR
Sbjct: 145 AEANR 149
>UniRef50_O93636 Cluster: 30S ribosomal protein S7P; n=1;
Methanococcoides methylutens|Rep: 30S ribosomal protein
S7P - Methanococcoides methylutens
Length = 69
Score = 40.3 bits (90), Expect = 0.049
Identities = 19/48 (39%), Positives = 32/48 (66%)
Frame = +3
Query: 555 GAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
GA ++AF++ + +E +A ELI A+ + ++I +KD ERVAK+ R
Sbjct: 22 GANQSAFKSKRXASESLASELIAASNRDAKCFSINRKDGKERVAKAAR 69
>UniRef50_P49495 Cluster: Chloroplast 30S ribosomal protein S7; n=1;
Odontella sinensis|Rep: Chloroplast 30S ribosomal
protein S7 - Odontella sinensis (Marine centric diatom)
Length = 158
Score = 37.9 bits (84), Expect = 0.26
Identities = 32/117 (27%), Positives = 53/117 (45%)
Frame = +3
Query: 333 NGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXX 512
+GKK +A IV AFEII + T E+PL AI N+ P +
Sbjct: 33 SGKKNLAQNIVNAAFEIIKVKTNEDPLVVFERAIRNASPVVEVKARRIGGSTYQVPVEVS 92
Query: 513 XXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERV 683
N + + +R+ R T++ +A+E+I+ A ++ IKKK+E ++
Sbjct: 93 GFRATNLSLRWIIQYSRQRVGR---TMSIKLANEIIDTANDIGNT--IKKKEETHKM 144
>UniRef50_O13744 Cluster: Mitochondrial ribosomal protein subunit
S7; n=1; Schizosaccharomyces pombe|Rep: Mitochondrial
ribosomal protein subunit S7 - Schizosaccharomyces pombe
(Fission yeast)
Length = 259
Score = 36.7 bits (81), Expect = 0.60
Identities = 37/125 (29%), Positives = 48/125 (38%), Gaps = 1/125 (0%)
Frame = +3
Query: 333 NGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXX 512
+GKK A +IV A II TGENP+ L AI P
Sbjct: 136 DGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSAKRFNKSVEFPMPLK 195
Query: 513 XXXXVNQAF-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAK 689
A W+L E + K +++ + E+I A S S KKKD L R+
Sbjct: 196 ERQRRRIALQWIL----GECKSSSPKRLSDRIVKEII--AIRSKTSNCFKKKDHLHRMCL 249
Query: 690 SNR*N 704
NR N
Sbjct: 250 VNRGN 254
>UniRef50_Q97SQ4 Cluster: 30S ribosomal protein S7; n=211;
Bacteria|Rep: 30S ribosomal protein S7 - Streptococcus
pneumoniae
Length = 156
Score = 36.3 bits (80), Expect = 0.79
Identities = 33/122 (27%), Positives = 54/122 (44%)
Frame = +3
Query: 333 NGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXX 512
+GK+ A IV AFE I TG + L+ TA+ N P +
Sbjct: 33 DGKRGTAASIVYGAFEQIKEATGNDALEVFETAMENIMPVLEVRARRVGGSNYQVPVKVR 92
Query: 513 XXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKS 692
L T AR R T+ + +A E+++AA ++ A+KK+++ R+A++
Sbjct: 93 PERRTTLGLRWLVTIAR---LRGEHTMQDRLAKEILDAA--NNTGAAVKKREDTHRMAEA 147
Query: 693 NR 698
NR
Sbjct: 148 NR 149
>UniRef50_Q4P8U6 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 299
Score = 35.5 bits (78), Expect = 1.4
Identities = 29/124 (23%), Positives = 49/124 (39%)
Frame = +3
Query: 333 NGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXX 512
+GKK A R + II +T NPL + AI+ + P
Sbjct: 176 DGKKAQAQRFITRTLSIISSVTNSNPLPLIHDAIYKAAPLVKVQSKKQGGKSLQVPVALT 235
Query: 513 XXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKS 692
+A + +++ R ++ +A E + +G+S AI KK+E ++A
Sbjct: 236 QRQSTRKALTWIIEASKKRPDRELE---RRLAAEFLAVVEGTSS--AIVKKEEQHKIATV 290
Query: 693 NR*N 704
NR N
Sbjct: 291 NRAN 294
>UniRef50_Q4SMB1 Cluster: Chromosome 3 SCAF14553, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 3
SCAF14553, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 292
Score = 35.1 bits (77), Expect = 1.8
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +3
Query: 573 FRNIKTIAECVADELINAAKGSSDSYAIKKKDELER 680
FRN+K I + V D+L+ KGSS + K+K+EL++
Sbjct: 126 FRNVKDIEDHVKDKLLLVKKGSSTELSDKEKNELKK 161
>UniRef50_A5VH21 Cluster: Putative uncharacterized protein; n=1;
Sphingomonas wittichii RW1|Rep: Putative uncharacterized
protein - Sphingomonas wittichii RW1
Length = 113
Score = 35.1 bits (77), Expect = 1.8
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +2
Query: 167 LLNMVSAGLHFPFKEKYAKIFTSIQ-LAGMQQAFPVKPSAPIVERLTNSLMMPRSGQWQK 343
L+ ++ L P ++K +K + L ++ FP+ PI + ++ P GQ +
Sbjct: 41 LVRPLNRNLCHPMRQKCSKALMGTKSLNRFERRFPLSGKGPIRTKYRRDIVEPLPGQMAQ 100
Query: 344 TDGRTY 361
TDGRT+
Sbjct: 101 TDGRTF 106
>UniRef50_UPI0000DB7910 Cluster: PREDICTED: similar to mitochondrial
ribosomal protein S7 CG5108-PA; n=1; Apis mellifera|Rep:
PREDICTED: similar to mitochondrial ribosomal protein S7
CG5108-PA - Apis mellifera
Length = 216
Score = 33.9 bits (74), Expect = 4.2
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = +3
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
WL+ T + N + I++ +A E+I+AAK + IKKK EL ++ ++NR
Sbjct: 161 WLIKTAQEKG---NTEKISDMLAKEIIDAAK--NQGRVIKKKQELHKLCEANR 208
>UniRef50_O96282 Cluster: Putative uncharacterized protein PFB0950w;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFB0950w - Plasmodium falciparum
(isolate 3D7)
Length = 307
Score = 33.1 bits (72), Expect = 7.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 629 SCIN*FICNTLCDCFNISECSLTCTCAQKPECLVDSA 519
SCI IC+ +C C I C +C C+ C+ SA
Sbjct: 215 SCICSCICSCICTCTCICSCLCSCICSCVCSCVCSSA 251
>UniRef50_Q83ES8 Cluster: 30S ribosomal protein S7; n=11;
Bacteria|Rep: 30S ribosomal protein S7 - Coxiella
burnetii
Length = 161
Score = 32.7 bits (71), Expect = 9.7
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +3
Query: 576 RNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
RN KT+ +A E+++A +G AIKK++++ R+AK+N+
Sbjct: 116 RNEKTMVLRLAHEILDAVEGRGG--AIKKREDVHRMAKANQ 154
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,140,512
Number of Sequences: 1657284
Number of extensions: 17386472
Number of successful extensions: 43323
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 41044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43182
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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