Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30618
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 155 6e-39
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 155 6e-39
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 37 0.003
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.92
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.8
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 3.7
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 3.7
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 27 3.7
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 3.7
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 4.9
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 4.9
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 4.9
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 26 4.9
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 8.6
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 155 bits (376), Expect = 6e-39
Identities = 79/126 (62%), Positives = 92/126 (73%)
Frame = +3
Query: 321 HGRDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXX 500
+GR+NGKKL+A RIVKHAFEII LLT +NPLQ LV A+ GPRED
Sbjct: 78 NGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQA 137
Query: 501 XXXXXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELER 680
VNQA L+ GAREAAFRN+K+I+EC+A+E+INAAKGSS+SYAIKKKDELER
Sbjct: 138 VDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELER 197
Query: 681 VAKSNR 698
VAKSNR
Sbjct: 198 VAKSNR 203
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 155 bits (376), Expect = 6e-39
Identities = 79/126 (62%), Positives = 92/126 (73%)
Frame = +3
Query: 321 HGRDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXX 500
+GR+NGKKL+A RIVKHAFEII LLT +NPLQ LV A+ GPRED
Sbjct: 78 NGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQA 137
Query: 501 XXXXXXXXVNQAFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELER 680
VNQA L+ GAREAAFRN+K+I+EC+A+E+INAAKGSS+SYAIKKKDELER
Sbjct: 138 VDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKKDELER 197
Query: 681 VAKSNR 698
VAKSNR
Sbjct: 198 VAKSNR 203
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 36.7 bits (81), Expect = 0.003
Identities = 37/125 (29%), Positives = 48/125 (38%), Gaps = 1/125 (0%)
Frame = +3
Query: 333 NGKKLMAVRIVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXX 512
+GKK A +IV A II TGENP+ L AI P
Sbjct: 136 DGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISPLMKLVSAKRFNKSVEFPMPLK 195
Query: 513 XXXXVNQAF-WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAK 689
A W+L E + K +++ + E+I A S S KKKD L R+
Sbjct: 196 ERQRRRIALQWIL----GECKSSSPKRLSDRIVKEII--AIRSKTSNCFKKKDHLHRMCL 249
Query: 690 SNR*N 704
NR N
Sbjct: 250 VNRGN 254
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 350 GRTYCQTCV*NYSLVNWRKPSASTRNCHFQLWT 448
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = -1
Query: 222 FAYFSLNGKCSPA 184
FAY+S++G+CSPA
Sbjct: 289 FAYWSISGRCSPA 301
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 265 SRKAQCPNRGAPYKLSNDATVGTMAKN*WPYVLSNMRLKL 384
S A N G PY+ V ++ W VL+N++L+L
Sbjct: 275 SFNASIDNEGGPYEDFFKVVVDNVSSRDWQPVLANLKLEL 314
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 625 QLRVHLTPTPSKRRTSWSVLLNPTV 699
Q ++H P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 203 TGNVVLQRPYSEDFGTFVSQLHLARKSLIFRKCSAGFLGKR 81
TG++ L+ E FG F S LHL+ F+K +L K+
Sbjct: 617 TGSIPLKPIQEETFGAFQSNLHLSDSWEDFQKNFIIYLKKK 657
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 604 THSAIVLIFLNAASRAPVHKSQNAWLTRRKGEHQRLDD 491
+H ++L+ PV +S AW + K E+QRL D
Sbjct: 851 SHEDVLLMHDTPEDTVPVFESLKAWESVHKEENQRLLD 888
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 544 SQNAWLTRRKGEHQRLDDELYP 479
SQ AWL+R KG L +YP
Sbjct: 445 SQAAWLSREKGVASELQSLVYP 466
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 226 IYLNSAGRYATSVSRKAQCPNRGAPYKLSNDATVGTMAKN*WPYVLSNMRLKLF 387
IYL +YA S+S ++ P L N V + + P ++S + +KLF
Sbjct: 1510 IYLKRYIKYAFSISDSSRPIREKKPLTLLNRGYVDLITSDAKPDIVSKLVIKLF 1563
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -3
Query: 580 FLNAASRAPVH----KSQNAWLTRRKGEHQRLDDELYPHDRILV 461
F NA + P+ ++Q+ R+ G D +YPHDR+++
Sbjct: 664 FQNAPTNFPMPTYGGRTQDQSYPRQNGYPSYSDGNVYPHDRVMI 707
>SPAC343.03 |apc11||anaphase-promoting complex subunit
Apc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 94
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +1
Query: 112 LKIKLFR----ARWSWLTNVPKSSEYGLCRTTF 198
+K+K+ R A W+W T PK G+CR F
Sbjct: 1 MKVKILRYHAIANWTWDT--PKDDVCGICRVPF 31
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 85 LPKKPAEHFLKIKLFRARWSWLTNVPKSSEYGLC 186
LP P E ++ WS L ++P SS +G+C
Sbjct: 134 LPSDPLE---LCRIHSVAWSPLVSLPSSSPWGVC 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,637
Number of Sequences: 5004
Number of extensions: 70522
Number of successful extensions: 170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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