Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30618
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 181 6e-46
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 180 1e-45
11_01_0117 + 906419-906524,907531-907667,907948-908055,909649-90... 30 1.7
12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201... 28 9.0
06_03_0188 - 17691582-17692241 28 9.0
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 28 9.0
02_02_0544 + 11367660-11368061,11368139-11368478,11369444-113695... 28 9.0
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 181 bits (440), Expect = 6e-46
Identities = 98/173 (56%), Positives = 114/173 (65%)
Frame = +3
Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
SL DY++ YLP + + KRF + P +L HGR+NGKK+MAVR
Sbjct: 29 SLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSLM-MHGRNNGKKIMAVR 87
Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
IVKHA EIIHLLT NP+Q +V AI NSGPRED VNQA
Sbjct: 88 IVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAI 147
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
+LL TGARE+AFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDE+ERVAK+NR
Sbjct: 148 YLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 200
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 180 bits (437), Expect = 1e-45
Identities = 98/173 (56%), Positives = 114/173 (65%)
Frame = +3
Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
SL DY++ YLP + + KRF + P +L HGR+NGKK+MAVR
Sbjct: 28 SLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTNSLM-MHGRNNGKKIMAVR 86
Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
IVKHA EIIHLLT NP+Q +V AI NSGPRED VNQA
Sbjct: 87 IVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAI 146
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
+LL TGARE+AFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDE+ERVAK+NR
Sbjct: 147 YLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 199
>11_01_0117 +
906419-906524,907531-907667,907948-908055,909649-909750,
909946-910033,910326-910560,910625-910715
Length = 288
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 170 EDFGTFVSQLHLARKSLIFRKCSAGFLGKRQGVSPQP 60
ED T V LHL ++ ++ KC + GK+ S P
Sbjct: 147 EDLVTVVCMLHLHQQEILICKCKSSSFGKKYSASGPP 183
>12_02_0611 +
21118777-21119066,21119501-21119594,21119742-21120182,
21120267-21120866
Length = 474
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 472 GRAGTVRRQAVDVHPCAESTKHSGF 546
GRAG ++++ + C ES H GF
Sbjct: 106 GRAGAMQKEEIKCFNCGESGHHQGF 130
>06_03_0188 - 17691582-17692241
Length = 219
Score = 27.9 bits (59), Expect = 9.0
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 469 SGRAGT-VRRQAVDVHPCAESTKHSGFCAQVHVRLHSEILKQSQSVLQMN*LMQLRVHLT 645
S AGT RR V P + H + + + LH + Q +L + + R H T
Sbjct: 99 SAFAGTCTRRVIVAAAPPRATPAHDAWL--LILGLHQTHAWRPQLLLSLR--LHWRRHAT 154
Query: 646 PTPSKRRTSWSVLL 687
P PS R +WS+ L
Sbjct: 155 PWPSSTRNAWSLSL 168
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -3
Query: 517 KGEHQRLDDELYPHDRILVESSRGPELKMAVTS 419
KGE D E P DR L P LK+ V S
Sbjct: 1634 KGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVS 1666
>02_02_0544 +
11367660-11368061,11368139-11368478,11369444-11369571,
11371249-11371404
Length = 341
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 113 RKCSAGFLGKRQGVSPQPKGCPGLRAKVG 27
R+ S G +R+G + Q GCP R VG
Sbjct: 303 RRASGGLAAEREGANRQGGGCPAGRWPVG 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,025,710
Number of Sequences: 37544
Number of extensions: 494180
Number of successful extensions: 1103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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