Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30618
         (741 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               197   9e-51
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)               29   4.0  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.0  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              29   5.2  
SB_52541| Best HMM Match : Ribosomal_L30 (HMM E-Value=9.1)             28   6.9  
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           28   6.9  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  197 bits (480), Expect = 9e-51
 Identities = 105/173 (60%), Positives = 119/173 (68%)
 Frame = +3

Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
           SL DYI+ +K     YLP  + +   KRF  +  P       ++   HGR+NGKKLM VR
Sbjct: 102 SLTDYIA-VKEKYSTYLPHTAGRYAAKRFRKAQCPIVERITNSMM-MHGRNNGKKLMTVR 159

Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
           I+KH+FEIIHLLTGENPLQ LV AI NSGPRED                      VNQA 
Sbjct: 160 IIKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 219

Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
           WLLCTGARE+AFRNIK+IAEC+ADELINAAKGSS+SYAIKKKDELERVAKSNR
Sbjct: 220 WLLCTGARESAFRNIKSIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 272


>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
          Length = 762

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 588 TIAECVADELINAAKGSSDSY--AIKKKDELERVAK 689
           T  +C+ DEL +  +G  +SY   +K+K+ELER  K
Sbjct: 422 TEVQCLRDELKDNEQGMDNSYQAILKEKEELERSHK 457


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 626  CIN*FICNTLCDCFNISECSLTCTC 552
            C+N  +C+    C  +   SLTCTC
Sbjct: 2164 CVNETVCDGNATCARVKGTSLTCTC 2188


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 635 TLSCIN*FICNTLCDCFNISECSLTCTCAQKPEC 534
           T  C +   C +  +C + SEC  T  CA   EC
Sbjct: 94  TRECESTSECESTTECESTSECESTSECASTTEC 127


>SB_52541| Best HMM Match : Ribosomal_L30 (HMM E-Value=9.1)
          Length = 103

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/52 (36%), Positives = 31/52 (59%)
 Frame = +1

Query: 163 KSSEYGLCRTTFPV*REVRKNIYLNSAGRYATSVSRKAQCPNRGAPYKLSND 318
           KS    L + +  V R+ RK++YL +  + + +VSRKAQ   R APY  +++
Sbjct: 23  KSLYLALRKCSENVSRKARKSLYL-ALRKCSENVSRKAQEHCRVAPYMYTDE 73


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 608 CNTLCDCFNISECSLTCTCAQKPECLVDSA 519
           C   C C   + C   CTC Q   C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 371  MFDNTYGHQFFA-IVPTVASLESL*GAPRLGHWALRETLVAY 249
            M D +Y H+    +VP         G  R  +WAL E ++AY
Sbjct: 2595 MIDYSYAHKVGKPVVPAALMNRPTRGERRFAYWALAECILAY 2636


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,132,269
Number of Sequences: 59808
Number of extensions: 555656
Number of successful extensions: 1995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1985
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)