Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30618
(741 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 206 9e-53
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 206 9e-53
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 206 9e-53
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 202 1e-51
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 201 2e-51
AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5 pr... 109 8e-24
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 62 3e-09
BC024154-1|AAH24154.1| 934|Homo sapiens ATP11A protein protein. 31 5.7
AL356752-2|CAI16579.1| 934|Homo sapiens ATPase, Class VI, type ... 31 5.7
AL356752-1|CAI16578.1| 1134|Homo sapiens ATPase, Class VI, type ... 31 5.7
AL356740-1|CAH70242.1| 1134|Homo sapiens ATPase, Class VI, type ... 31 5.7
AL139384-1|CAI16947.1| 1134|Homo sapiens ATPase, Class VI, type ... 31 5.7
AB028944-1|BAA82973.2| 1102|Homo sapiens KIAA1021 protein protein. 31 5.7
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 206 bits (502), Expect = 9e-53
Identities = 111/173 (64%), Positives = 121/173 (69%)
Frame = +3
Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
SLQDYI+ +K KYLP + + KRF + P ++ HGR+NGKKLM VR
Sbjct: 34 SLQDYIA-VKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMM-MHGRNNGKKLMTVR 91
Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
IVKHAFEIIHLLTGENPLQ LV AI NSGPRED VNQA
Sbjct: 92 IVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 151
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
WLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDELERVAKSNR
Sbjct: 152 WLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 206 bits (502), Expect = 9e-53
Identities = 111/173 (64%), Positives = 121/173 (69%)
Frame = +3
Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
SLQDYI+ +K KYLP + + KRF + P ++ HGR+NGKKLM VR
Sbjct: 34 SLQDYIA-VKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMM-MHGRNNGKKLMTVR 91
Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
IVKHAFEIIHLLTGENPLQ LV AI NSGPRED VNQA
Sbjct: 92 IVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 151
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
WLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDELERVAKSNR
Sbjct: 152 WLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 206 bits (502), Expect = 9e-53
Identities = 111/173 (64%), Positives = 121/173 (69%)
Frame = +3
Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
SLQDYI+ +K KYLP + + KRF + P ++ HGR+NGKKLM VR
Sbjct: 34 SLQDYIA-VKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMM-MHGRNNGKKLMTVR 91
Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
IVKHAFEIIHLLTGENPLQ LV AI NSGPRED VNQA
Sbjct: 92 IVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 151
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
WLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDELERVAKSNR
Sbjct: 152 WLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 202 bits (493), Expect = 1e-51
Identities = 109/173 (63%), Positives = 120/173 (69%)
Frame = +3
Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
SLQDYI+ +K KYLP + + KRF + P ++ HGR+NGKKLM VR
Sbjct: 34 SLQDYIA-VKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMM-MHGRNNGKKLMTVR 91
Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
IVKHAFEIIHLLTGENPLQ LV AI NSGPRED VNQA
Sbjct: 92 IVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 151
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
WLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS+ YAIKK+DELERVAKSNR
Sbjct: 152 WLLCTGAREAAFRNIKTIAECLADELINAAKGSSNFYAIKKRDELERVAKSNR 204
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 201 bits (491), Expect = 2e-51
Identities = 109/173 (63%), Positives = 119/173 (68%)
Frame = +3
Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
SLQDYI+ +K KYLP + + F + P ++ HGR+NGKKLM VR
Sbjct: 34 SLQDYIA-VKEKYAKYLPHSAGRYAANAFRKAQCPIVERLTNSMM-MHGRNNGKKLMTVR 91
Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
IVKHAFEIIHLLTGENPLQ LV AI NSGPRED VNQA
Sbjct: 92 IVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 151
Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
WLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDELERVAKSNR
Sbjct: 152 WLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>AB007149-1|BAA25815.1| 55|Homo sapiens ribosomal protein S5
protein.
Length = 55
Score = 109 bits (263), Expect = 8e-24
Identities = 52/55 (94%), Positives = 54/55 (98%)
Frame = +3
Query: 534 AFWLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
A WLLCTGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDELERVAKSNR
Sbjct: 1 AIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 55
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 61.7 bits (143), Expect = 3e-09
Identities = 30/37 (81%), Positives = 31/37 (83%)
Frame = +3
Query: 321 HGRDNGKKLMAVRIVKHAFEIIHLLTGENPLQALVTA 431
HGR+NGKKLM VRIVKHAFEIIHLLTGE L LV A
Sbjct: 16 HGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRA 52
>BC024154-1|AAH24154.1| 934|Homo sapiens ATP11A protein protein.
Length = 934
Score = 30.7 bits (66), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 574 NAASRAPVHKSQNAWLTRRKGEHQRL-------DDELYPHDRILVESSRGPELKMAVTSA 416
NA ++ PVH Q+ L R++ R+ +DE +P D I + S+RG T++
Sbjct: 97 NAMNQCPVHFIQHGKLVRKQSRKLRVGDIVMVKEDETFPCDLIFLSSNRGDGTCHVTTAS 156
Query: 415 CRGFS 401
G S
Sbjct: 157 LDGES 161
>AL356752-2|CAI16579.1| 934|Homo sapiens ATPase, Class VI, type 11A
protein.
Length = 934
Score = 30.7 bits (66), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 574 NAASRAPVHKSQNAWLTRRKGEHQRL-------DDELYPHDRILVESSRGPELKMAVTSA 416
NA ++ PVH Q+ L R++ R+ +DE +P D I + S+RG T++
Sbjct: 97 NAMNQCPVHFIQHGKLVRKQSRKLRVGDIVMVKEDETFPCDLIFLSSNRGDGTCHVTTAS 156
Query: 415 CRGFS 401
G S
Sbjct: 157 LDGES 161
>AL356752-1|CAI16578.1| 1134|Homo sapiens ATPase, Class VI, type 11A
protein.
Length = 1134
Score = 30.7 bits (66), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 574 NAASRAPVHKSQNAWLTRRKGEHQRL-------DDELYPHDRILVESSRGPELKMAVTSA 416
NA ++ PVH Q+ L R++ R+ +DE +P D I + S+RG T++
Sbjct: 123 NAMNQCPVHFIQHGKLVRKQSRKLRVGDIVMVKEDETFPCDLIFLSSNRGDGTCHVTTAS 182
Query: 415 CRGFS 401
G S
Sbjct: 183 LDGES 187
>AL356740-1|CAH70242.1| 1134|Homo sapiens ATPase, Class VI, type 11A
protein.
Length = 1134
Score = 30.7 bits (66), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 574 NAASRAPVHKSQNAWLTRRKGEHQRL-------DDELYPHDRILVESSRGPELKMAVTSA 416
NA ++ PVH Q+ L R++ R+ +DE +P D I + S+RG T++
Sbjct: 123 NAMNQCPVHFIQHGKLVRKQSRKLRVGDIVMVKEDETFPCDLIFLSSNRGDGTCHVTTAS 182
Query: 415 CRGFS 401
G S
Sbjct: 183 LDGES 187
>AL139384-1|CAI16947.1| 1134|Homo sapiens ATPase, Class VI, type 11A
protein.
Length = 1134
Score = 30.7 bits (66), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 574 NAASRAPVHKSQNAWLTRRKGEHQRL-------DDELYPHDRILVESSRGPELKMAVTSA 416
NA ++ PVH Q+ L R++ R+ +DE +P D I + S+RG T++
Sbjct: 123 NAMNQCPVHFIQHGKLVRKQSRKLRVGDIVMVKEDETFPCDLIFLSSNRGDGTCHVTTAS 182
Query: 415 CRGFS 401
G S
Sbjct: 183 LDGES 187
>AB028944-1|BAA82973.2| 1102|Homo sapiens KIAA1021 protein protein.
Length = 1102
Score = 30.7 bits (66), Expect = 5.7
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = -3
Query: 574 NAASRAPVHKSQNAWLTRRKGEHQRL-------DDELYPHDRILVESSRGPELKMAVTSA 416
NA ++ PVH Q+ L R++ R+ +DE +P D I + S+RG T++
Sbjct: 91 NAMNQCPVHFIQHGKLVRKQSRKLRVGDIVMVKEDETFPCDLIFLSSNRGDGTCHVTTAS 150
Query: 415 CRGFS 401
G S
Sbjct: 151 LDGES 155
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,304,554
Number of Sequences: 237096
Number of extensions: 2809119
Number of successful extensions: 5583
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5557
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -