Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30618
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   2.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -2

Query: 608 CNTLCDCFNISECSLTCTCAQKPECLVD 525
           C  LC C +   C    TC    +C  D
Sbjct: 743 CFALCHCCDFDACDCEMTCPAGCKCYND 770


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 197 NVVLQRPYSEDFGTFVSQLHLARKSLIFR-KCSA 99
           N  LQ    +DFGT+  Q  L  K LI + KC+A
Sbjct: 4   NFTLQS-LKKDFGTYFQQYCLHHKILIKKNKCNA 36


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 160 PKSSEYGLCRTTFPV*REVRKNIYLNSAGRYATSVSRKAQCPNRGA 297
           P  +E   CR         RK++  ++ GR +  V R   CP  GA
Sbjct: 35  PLPTECVFCRNNGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGA 80


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 122 LIFRKCSAGFLGKRQGVSPQPKGCPGL 42
           +I+R    GF    +G+ P PK  P L
Sbjct: 187 IIYRAAYFGFYDTARGMLPDPKKTPFL 213


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 122 LIFRKCSAGFLGKRQGVSPQPKGCPGL 42
           +I+R    GF    +G+ P PK  P L
Sbjct: 187 IIYRAAYFGFYDTARGMLPDPKKTPFL 213


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +2

Query: 299 LTNSLMMPRSGQWQKTDGRTYCQTCV*NYSLVNWRKP 409
           L + L+  R         + +CQ      S + WRKP
Sbjct: 4   LASQLLKSRESLLSNAYKQGFCQPTQRTMSKIQWRKP 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,546
Number of Sequences: 438
Number of extensions: 5003
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)