BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30618 (741 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi... 175 3e-44 At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila... 174 4e-44 At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila... 174 4e-44 At1g69360.1 68414.m07960 expressed protein 29 2.4 At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxida... 29 4.3 At1g59590.1 68414.m06702 expressed protein 28 5.7 At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ... 28 5.7 At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r... 27 9.9 >At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical to GP:3043428 Length = 207 Score = 175 bits (426), Expect = 3e-44 Identities = 97/173 (56%), Positives = 113/173 (65%) Frame = +3 Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359 SL DYI ++P + + KRF + P +L HGR+NGKKLMAVR Sbjct: 36 SLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLM-MHGRNNGKKLMAVR 94 Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539 IVKHA EIIHLL+ NP+Q ++ AI NSGPRED VNQA Sbjct: 95 IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154 Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698 +LL TGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDE+ERVAK+NR Sbjct: 155 FLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 >At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from [Arabidopsis thaliana] Length = 207 Score = 174 bits (424), Expect = 4e-44 Identities = 96/173 (55%), Positives = 113/173 (65%) Frame = +3 Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359 SL DYI ++P + + KRF + P +L HGR+NGKKLMAVR Sbjct: 36 SLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLM-MHGRNNGKKLMAVR 94 Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539 IVKHA EIIHLL+ NP+Q ++ AI NSGPRED VNQA Sbjct: 95 IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154 Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698 +L+ TGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDE+ERVAK+NR Sbjct: 155 FLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 >At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from [Arabidopsis thaliana] Length = 207 Score = 174 bits (424), Expect = 4e-44 Identities = 96/173 (55%), Positives = 113/173 (65%) Frame = +3 Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359 SL DYI ++P + + KRF + P +L HGR+NGKKLMAVR Sbjct: 36 SLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLM-MHGRNNGKKLMAVR 94 Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539 IVKHA EIIHLL+ NP+Q ++ AI NSGPRED VNQA Sbjct: 95 IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154 Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698 +L+ TGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDE+ERVAK+NR Sbjct: 155 FLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207 >At1g69360.1 68414.m07960 expressed protein Length = 896 Score = 29.5 bits (63), Expect = 2.4 Identities = 15/59 (25%), Positives = 26/59 (44%) Frame = +1 Query: 436 STLDPVKIRLGSGRAGTVRRQAVDVHPCAESTKHSGFCAQVHVRLHSEILKQSQSVLQM 612 S + V + G RQ +D++ CA + SGFC+ V + L ++ L + Sbjct: 575 SVSEGVVVDKEEGNKAATHRQHIDLNFCASEDEDSGFCSNPRVETKATTLINVEAPLTL 633 >At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxidase / ACC oxidase / ethylene-forming enzyme (ACO) (EAT1) Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073, gb|T5714, gb|R90435, gb|R44023, gb|AA597926, gb|AI099676, gb|AA650810 and gb|29725 come from this gene Length = 323 Score = 28.7 bits (61), Expect = 4.3 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 118 FSGNVRPAFWVKDKGFPPNPKVALAFGLRS 29 F G+ RP F K +PP P L GLR+ Sbjct: 147 FYGSKRPTFGTKVSNYPPCPNPDLVKGLRA 176 >At1g59590.1 68414.m06702 expressed protein Length = 211 Score = 28.3 bits (60), Expect = 5.7 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = +3 Query: 630 KGSSDSYAIKKKDELERVAKSNR 698 +GSS SYA+KKKD +++ NR Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196 >At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam profiles PF04677: Protein similar to CwfJ N terminus 1, PF04676: Protein similar to CwfJ N terminus 2 Length = 692 Score = 28.3 bits (60), Expect = 5.7 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 559 APVHKSQNAWLTRRKGEHQRLDDELYPHDRILVESSRGPELK 434 AP NA RR+GE+++ D E P +RI + + LK Sbjct: 198 APSRAHLNAINNRRRGENEKNDSEKKPKERISEKGNNREYLK 239 >At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 1568 Score = 27.5 bits (58), Expect = 9.9 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = +1 Query: 211 EVRKNIYLNSAGRYATSVSRKAQCPNRGAPYKLSNDATVGT 333 E+RK + + A A + +K++C N GA +DAT+G+ Sbjct: 223 EIRKEVEVRVAA--ARLLQQKSECENVGAVDNKGSDATLGS 261 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,500,513 Number of Sequences: 28952 Number of extensions: 389836 Number of successful extensions: 875 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 839 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 863 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1633819784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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