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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30618
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   175   3e-44
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   174   4e-44
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   174   4e-44
At1g69360.1 68414.m07960 expressed protein                             29   2.4  
At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxida...    29   4.3  
At1g59590.1 68414.m06702 expressed protein                             28   5.7  
At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam ...    28   5.7  
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r...    27   9.9  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  175 bits (426), Expect = 3e-44
 Identities = 97/173 (56%), Positives = 113/173 (65%)
 Frame = +3

Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
           SL DYI         ++P  + +   KRF  +  P       +L   HGR+NGKKLMAVR
Sbjct: 36  SLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLM-MHGRNNGKKLMAVR 94

Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
           IVKHA EIIHLL+  NP+Q ++ AI NSGPRED                      VNQA 
Sbjct: 95  IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154

Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
           +LL TGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDE+ERVAK+NR
Sbjct: 155 FLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  174 bits (424), Expect = 4e-44
 Identities = 96/173 (55%), Positives = 113/173 (65%)
 Frame = +3

Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
           SL DYI         ++P  + +   KRF  +  P       +L   HGR+NGKKLMAVR
Sbjct: 36  SLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLM-MHGRNNGKKLMAVR 94

Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
           IVKHA EIIHLL+  NP+Q ++ AI NSGPRED                      VNQA 
Sbjct: 95  IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154

Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
           +L+ TGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDE+ERVAK+NR
Sbjct: 155 FLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  174 bits (424), Expect = 4e-44
 Identities = 96/173 (55%), Positives = 113/173 (65%)
 Frame = +3

Query: 180 SLQDYISRLKRSTQKYLPQFSWQVCNKRFP*SPVPQSWSALQTL**CHGRDNGKKLMAVR 359
           SL DYI         ++P  + +   KRF  +  P       +L   HGR+NGKKLMAVR
Sbjct: 36  SLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLM-MHGRNNGKKLMAVR 94

Query: 360 IVKHAFEIIHLLTGENPLQALVTAIFNSGPREDXXXXXXXXXXXXXXXXXXXXXXVNQAF 539
           IVKHA EIIHLL+  NP+Q ++ AI NSGPRED                      VNQA 
Sbjct: 95  IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154

Query: 540 WLLCTGAREAAFRNIKTIAECVADELINAAKGSSDSYAIKKKDELERVAKSNR 698
           +L+ TGAREAAFRNIKTIAEC+ADELINAAKGSS+SYAIKKKDE+ERVAK+NR
Sbjct: 155 FLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207


>At1g69360.1 68414.m07960 expressed protein
          Length = 896

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 436 STLDPVKIRLGSGRAGTVRRQAVDVHPCAESTKHSGFCAQVHVRLHSEILKQSQSVLQM 612
           S  + V +    G      RQ +D++ CA   + SGFC+   V   +  L   ++ L +
Sbjct: 575 SVSEGVVVDKEEGNKAATHRQHIDLNFCASEDEDSGFCSNPRVETKATTLINVEAPLTL 633


>At1g05010.1 68414.m00502 1-aminocyclopropane-1-carboxylate oxidase
           / ACC oxidase / ethylene-forming enzyme (ACO) (EAT1)
           Identical to 1-aminocyclopropane-1-carboxylate oxidase
           (ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073,
           gb|T5714, gb|R90435, gb|R44023, gb|AA597926,
           gb|AI099676, gb|AA650810 and gb|29725 come from this
           gene
          Length = 323

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 118 FSGNVRPAFWVKDKGFPPNPKVALAFGLRS 29
           F G+ RP F  K   +PP P   L  GLR+
Sbjct: 147 FYGSKRPTFGTKVSNYPPCPNPDLVKGLRA 176


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 630 KGSSDSYAIKKKDELERVAKSNR 698
           +GSS SYA+KKKD   +++  NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196


>At1g56290.1 68414.m06471 CwfJ-like family protein contains Pfam
           profiles PF04677: Protein similar to CwfJ N terminus 1,
           PF04676: Protein similar to CwfJ N terminus 2
          Length = 692

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 559 APVHKSQNAWLTRRKGEHQRLDDELYPHDRILVESSRGPELK 434
           AP     NA   RR+GE+++ D E  P +RI  + +    LK
Sbjct: 198 APSRAHLNAINNRRRGENEKNDSEKKPKERISEKGNNREYLK 239


>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1568

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 211 EVRKNIYLNSAGRYATSVSRKAQCPNRGAPYKLSNDATVGT 333
           E+RK + +  A   A  + +K++C N GA     +DAT+G+
Sbjct: 223 EIRKEVEVRVAA--ARLLQQKSECENVGAVDNKGSDATLGS 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,513
Number of Sequences: 28952
Number of extensions: 389836
Number of successful extensions: 875
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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