Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30617
(467 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 89 3e-19
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 87 2e-18
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 0.62
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 26 2.5
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 2.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 4.4
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 5.8
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 5.8
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 5.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 5.8
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 7.6
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 7.6
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 7.6
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 89.0 bits (211), Expect = 3e-19
Identities = 38/59 (64%), Positives = 48/59 (81%)
Frame = +3
Query: 78 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHML 254
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCM 64
Score = 71.7 bits (168), Expect = 5e-14
Identities = 32/63 (50%), Positives = 47/63 (74%)
Frame = +2
Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+++ L ++VTN A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 434 SQE 442
SQE
Sbjct: 125 SQE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 86.6 bits (205), Expect = 2e-18
Identities = 38/59 (64%), Positives = 47/59 (79%)
Frame = +3
Query: 78 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHML 254
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCM 64
Score = 72.1 bits (169), Expect = 4e-14
Identities = 32/63 (50%), Positives = 47/63 (74%)
Frame = +2
Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
PNG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+++ L ++VTN A++R
Sbjct: 65 PNGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVR 124
Query: 434 SQE 442
SQE
Sbjct: 125 SQE 127
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 0.62
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = -1
Query: 251 HMTGLLVGTVTDVGHQVLTLESPADSVVNTSRF-TPIPLKFV--IAIRLMPDKSLRP 90
H+ G+ T + G + +T DS + + TP+P+KFV IA+ MP +LRP
Sbjct: 395 HLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIAMHSMPRVALRP 449
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 409 HSDAELLGSFHDQLPLLRRDTVSDLCAVL 323
HSD + + +F DQ +RR + LC +L
Sbjct: 151 HSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 2.5
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 304 LDDAKQEVLRRDRSRCLFEEAEADRGKIPAAQHQSDESSRSPPVPGERLNIF 459
L++ K E + R R + RG+ P SD SRS VP +R+N++
Sbjct: 218 LEEEKMETINRLLKR-QSNTGKPRRGRAPN-NPTSDSISRSKAVPKDRINMY 267
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 4.4
Identities = 8/40 (20%), Positives = 23/40 (57%)
Frame = +2
Query: 218 RLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAE 337
R+ ++ + + N R+ +HN++ ++ L+ Q ++C +
Sbjct: 582 RIIYRLTQSASSDNALREWFLHNIESIDQLIAQAHEFCID 621
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 292 RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKIPAAQH 402
R DDAK+ +R + E E + KIPA QH
Sbjct: 264 RKRKTDDAKKSRKKRAPHIHIEYEQERENEKIPAVQH 300
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 102 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 5.8
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +2
Query: 329 CAEIAHGVSSKKRKLIVERSQQLSIRVTN 415
C + HGV + K ++ER + +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 454 YLVVLLGPEASGWIRHSDAELLGSFHDQLPLLRR-DTVSDLCAVLPVLHHQDFQLFN 287
YL++ LG + ++R + +GS +LPL++ + L +L + + F F+
Sbjct: 1195 YLILYLGNYMNDYVRQAKGFAIGSL-QRLPLIKNANNTKSLLHILDITIRKHFPQFD 1250
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 7.6
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 466 IIQKYLVVLLGPEASGWIRHSDAELLGSFHD 374
I QK ++ L+ GWIR AELL S D
Sbjct: 440 ISQKEIIPLI-INCPGWIRGGGAELLSSIVD 469
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 7.6
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 69 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 218
R T VK+R K I+ S+ + KP G R R+ K Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 7.6
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +1
Query: 226 VPTRRPVICSKWIP 267
+PT+ PV C+ W P
Sbjct: 205 IPTKHPVTCADWRP 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,844,695
Number of Sequences: 5004
Number of extensions: 35786
Number of successful extensions: 118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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