Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30617
(467 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 99 2e-21
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 99 2e-21
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 98 4e-21
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 94 4e-20
05_05_0377 - 24498664-24500215,24500306-24500643 29 1.9
10_07_0016 + 11826066-11826773 29 2.5
08_02_1238 + 25486263-25487574,25488210-25489117 28 3.3
05_01_0395 + 3118480-3119097,3119699-3119989,3120063-3120114,312... 27 5.7
02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902... 27 10.0
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 98.7 bits (235), Expect = 2e-21
Identities = 47/67 (70%), Positives = 54/67 (80%)
Frame = +2
Query: 248 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAAR 427
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVER+ QL I VTN AR
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 126
Query: 428 LRSQEND 448
LRSQE++
Sbjct: 127 LRSQEDE 133
Score = 94.3 bits (224), Expect = 4e-20
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 228 SNKKTRHML 254
S+KKTRH L
Sbjct: 60 SDKKTRHYL 68
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 98.7 bits (235), Expect = 2e-21
Identities = 47/67 (70%), Positives = 54/67 (80%)
Frame = +2
Query: 248 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAAR 427
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVER+ QL I VTN AR
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193
Query: 428 LRSQEND 448
LRSQE++
Sbjct: 194 LRSQEDE 200
Score = 68.1 bits (159), Expect = 3e-12
Identities = 28/37 (75%), Positives = 34/37 (91%)
Frame = +3
Query: 144 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHML 254
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH L
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYL 135
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 140
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 97.9 bits (233), Expect = 4e-21
Identities = 46/72 (63%), Positives = 56/72 (77%)
Frame = +3
Query: 39 TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 218
TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNI
Sbjct: 320 TYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNI 378
Query: 219 GYGSNKKTRHML 254
GYGS+KKTRH L
Sbjct: 379 GYGSDKKTRHYL 390
Score = 41.5 bits (93), Expect = 3e-04
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +2
Query: 248 YAPNGFRKVLVHNVKELEILMMQNR 322
Y PN F+K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 94.3 bits (224), Expect = 4e-20
Identities = 45/69 (65%), Positives = 54/69 (78%)
Frame = +3
Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 228 SNKKTRHML 254
S+KKTRH L
Sbjct: 60 SDKKTRHYL 68
Score = 81.0 bits (191), Expect = 4e-16
Identities = 37/55 (67%), Positives = 44/55 (80%)
Frame = +2
Query: 248 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVT 412
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVER+ QL I ++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 29.1 bits (62), Expect = 1.9
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Frame = -1
Query: 278 LGPYGIHLEHMTGLLVGTVTDVGHQVL--TLESPADSVVNTSRFTPIPLKFVIAIRLMPD 105
L P+G L T T GH VL L SPA TP+P L +
Sbjct: 472 LAPFGASLVEYTSYADTATTIPGHYVLFWELRSPAGG-------TPVPASVFEDCCLAVE 524
Query: 104 KSLRPLFDDCRPVNRSYSHL 45
+ L ++ CR +RS L
Sbjct: 525 EGLNSVYRQCRAADRSIGPL 544
>10_07_0016 + 11826066-11826773
Length = 235
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 271 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEADRGKIPAAQHQSDESSRSPPVPG 441
G ++ C AG A+ E +D + EEA AD G++ AA + ++ +PG
Sbjct: 59 GQTAAC-GAGRWAAARDEAAAQDEAAARDEEAGADGGRLHAATASTTAAAAVAGIPG 114
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -2
Query: 388 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 305
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>05_01_0395 +
3118480-3119097,3119699-3119989,3120063-3120114,
3120395-3120546
Length = 370
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 376 RGKIPAAQHQSDESSRSPPVPGERLNI 456
R K+ A + + DE RSPP P + +
Sbjct: 19 RAKVAAEEEEYDEPCRSPPAPAAKKKV 45
>02_02_0331 +
9017291-9019084,9019205-9019402,9020014-9020184,
9020292-9020435,9020552-9020764,9020859-9021929,
9022365-9022391
Length = 1205
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 307 DDAKQEV-LRRDRSRCLFEEAEADRGKIPAAQHQSDESSRSPPV 435
DD K E ++RD + E E + GK + ++S+ PPV
Sbjct: 331 DDKKPEASVQRDEKKASSTEMEEENGKRSNEESSKAKNSKLPPV 374
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,502
Number of Sequences: 37544
Number of extensions: 239604
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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