Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30617
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             116   7e-27
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.21 
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)               30   0.83 
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)               28   3.4  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   3.4  
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)                  28   4.4  
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   4.4  
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)                   27   5.9  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                 27   7.7  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  116 bits (280), Expect = 7e-27
 Identities = 50/67 (74%), Positives = 59/67 (88%)
 Frame = +3

Query: 54  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 233
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 234 KKTRHML 254
           KKTR ++
Sbjct: 62  KKTRFLM 68



 Score =  103 bits (248), Expect = 6e-23
 Identities = 48/65 (73%), Positives = 57/65 (87%)
 Frame = +2

Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
           P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVER+QQLSI+VTN  ARLR
Sbjct: 69  PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVTNSNARLR 128

Query: 434 SQEND 448
           S+EN+
Sbjct: 129 SEENE 133


>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = -1

Query: 269 YGIHLEHMTGLLVGTVTDV--GHQV--LTLESPADSVVNTSRFTPIPLKFVIAIRLMPDK 102
           YG H   M G  + T+TD+   H+V  L +E  A  ++ T++FTP  + F+ A  +    
Sbjct: 491 YGTHEGAMYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGIN 549

Query: 101 SLRPLFDDCRPVNRSYSHLVCXFKKRD 21
            +RP   +  P   +   L    K+ D
Sbjct: 550 DIRPPVANHEPAEDAGESLKRLAKESD 576


>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 839

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 218 RLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHG-VSSKKRKLI 376
           +L+ Q+  PS  P  + +++V  ++E E+     RK+C EIA+  V S  R+++
Sbjct: 271 KLKCQKYWPSANPEEYGRLVVTPLEEEELSHYVIRKFCIEIANSDVESPAREIV 324


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 39  TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 218
           +YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +
Sbjct: 14  SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71

Query: 219 GYGSNKKTRHMLQMD 263
           G  S K  R +L  D
Sbjct: 72  GRLSAKPERDVLMQD 86


>SB_37429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 352 LFEEAEADRGKIPAAQHQSDESSRSPPVPGER 447
           L +E E D   I  A   S+ESS S P+P ER
Sbjct: 69  LDDEQEEDEEYIIGADSDSEESSESLPLPHER 100


>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
          Length = 758

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = +2

Query: 182 QAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRK 325
           + ++G++   +  +++Q+E     P G RK +   ++ELE ++    K
Sbjct: 594 KVLKGTLEITEGEVKYQREHTGRTPKGKRKEIWREIRELETILKDVHK 641


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 406 SDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHH 308
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
          Length = 1002

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 316 KQEVLRRDRSRCLFEEAEADRGKIPAAQHQSDESSRSPPVPGER 447
           +Q ++   R  C   +A    G  P+  H+  +  R  PVPG+R
Sbjct: 774 QQRLIEHHRKNCPRLQATIRFGPDPSVAHRYRKQGRPVPVPGKR 817


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 24/80 (30%), Positives = 41/80 (51%)
 Frame = +2

Query: 203 LDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVE 382
           LDA+ R +F+QE        F  VLV +++E E    Q ++   EIA  + ++  +L  E
Sbjct: 85  LDAK-RKKFKQEKHLLYNLEFSPVLVLDLEESEKSAKQEKESDEEIARRLQAEIERLREE 143

Query: 383 RSQQLSIRVTNPAARLRSQE 442
            S+ L  +     A++R +E
Sbjct: 144 GSRLLQEQQELLKAQIREEE 163


>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
          Length = 124

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 374 SASASSKRHRERSLRSTSCFASSRFPAL*HCEL 276
           S   + +R  +RS + ++C AS R P+   CEL
Sbjct: 21  STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 189 FKGQYLMPNIGYGSNKKTRHMLQMDSVRS*FTMLKS 296
           +K  YL  +I  G N KTR ++ + ++R  F M KS
Sbjct: 136 WKATYLNNSIDSGDNSKTRCLISVLTLRKRFIMDKS 171


>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +1

Query: 304 LDDAKQEVLRRDRSRCLFEEAEADRGKIPAAQHQSDESSRSPPVPG 441
           L +  Q  L   R  C   +   +  K   A  QS +  RSPPVPG
Sbjct: 94  LHETTQCFLTHSRDFCYVSKERLEGNKFVLAS-QSIDHERSPPVPG 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,960,637
Number of Sequences: 59808
Number of extensions: 275041
Number of successful extensions: 1072
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)