Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30617
         (467 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for ...   132   4e-31
BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32 p...   132   4e-31
BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32 p...   132   4e-31
AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32 p...   132   4e-31
BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.        81   1e-15
BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.      51   2e-06
BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.      49   7e-06
U35113-1|AAA78935.1|  715|Homo sapiens mta1 protein.                   29   6.1  
BC142941-1|AAI42942.1|  715|Homo sapiens metastasis associated 1...    29   6.1  
BC009443-1|AAH09443.2|  263|Homo sapiens MTA1 protein protein.         29   6.1  

>X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for
           ribosomal protein L32. ).
          Length = 135

 Score =  132 bits (320), Expect = 4e-31
 Identities = 58/68 (85%), Positives = 64/68 (94%)
 Frame = +3

Query: 51  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 230
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 231 NKKTRHML 254
           NKKT+HML
Sbjct: 63  NKKTKHML 70



 Score =  106 bits (254), Expect = 4e-23
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = +2

Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
           P+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVER+ QL+IRVTNP ARLR
Sbjct: 71  PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLR 130

Query: 434 SQEND 448
           S+EN+
Sbjct: 131 SEENE 135


>BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  132 bits (320), Expect = 4e-31
 Identities = 58/68 (85%), Positives = 64/68 (94%)
 Frame = +3

Query: 51  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 230
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 231 NKKTRHML 254
           NKKT+HML
Sbjct: 63  NKKTKHML 70



 Score =  106 bits (254), Expect = 4e-23
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = +2

Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
           P+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVER+ QL+IRVTNP ARLR
Sbjct: 71  PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLR 130

Query: 434 SQEND 448
           S+EN+
Sbjct: 131 SEENE 135


>BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  132 bits (320), Expect = 4e-31
 Identities = 58/68 (85%), Positives = 64/68 (94%)
 Frame = +3

Query: 51  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 230
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 231 NKKTRHML 254
           NKKT+HML
Sbjct: 63  NKKTKHML 70



 Score =  106 bits (254), Expect = 4e-23
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = +2

Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
           P+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVER+ QL+IRVTNP ARLR
Sbjct: 71  PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLR 130

Query: 434 SQEND 448
           S+EN+
Sbjct: 131 SEENE 135


>AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score =  132 bits (320), Expect = 4e-31
 Identities = 58/68 (85%), Positives = 64/68 (94%)
 Frame = +3

Query: 51  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGS 230
           A+RP+ +P IVKKRTK+FIRHQSDRY K+KRNWRKPRGIDNRVRRRFKGQ LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 231 NKKTRHML 254
           NKKT+HML
Sbjct: 63  NKKTKHML 70



 Score =  106 bits (254), Expect = 4e-23
 Identities = 49/65 (75%), Positives = 57/65 (87%)
 Frame = +2

Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
           P+GFRK LVHNVKELE+L+M N+ YCAEIAH VSSK RK IVER+ QL+IRVTNP ARLR
Sbjct: 71  PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLR 130

Query: 434 SQEND 448
           S+EN+
Sbjct: 131 SEENE 135


>BC015974-1|AAH15974.1|  107|Homo sapiens RPS29 protein protein.
          Length = 107

 Score = 81.4 bits (192), Expect = 1e-15
 Identities = 38/65 (58%), Positives = 48/65 (73%)
 Frame = +2

Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
           P+GF K LVHNVKELE+L++ N+ YC EI H VSSK  K I+ER+ Q+ IRVTN  A L 
Sbjct: 43  PSGFWKFLVHNVKELEVLLVSNKSYCVEITHDVSSKNCKAILERAAQVVIRVTNANASLH 102

Query: 434 SQEND 448
           S E++
Sbjct: 103 SAESE 107



 Score = 34.7 bits (76), Expect = 0.16
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 207 MPNIGYGSNKKTRHML 254
           MPNIGYG NKKT+H+L
Sbjct: 27  MPNIGYGRNKKTKHIL 42


>BC053996-1|AAH53996.1|   33|Homo sapiens RPL32P3 protein protein.
          Length = 33

 Score = 51.2 bits (117), Expect = 2e-06
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +3

Query: 51  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKR 143
           A+R + +P IVKKRTK+FIRHQSDRY K+KR
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIKR 33


>BC015389-1|AAH15389.1|   82|Homo sapiens RPL32P3 protein protein.
          Length = 82

 Score = 49.2 bits (112), Expect = 7e-06
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 51  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 140
           A+R + +P IVKKRTK+FIRHQSDRY K+K
Sbjct: 3   ALRSLVKPKIVKKRTKKFIRHQSDRYVKIK 32


>U35113-1|AAA78935.1|  715|Homo sapiens mta1 protein.
          Length = 715

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 138 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHM 251
           KR++ +  G+D  +++R     LMP+ G  ++ +TRHM
Sbjct: 582 KRSYEQHNGVDGNMKKRL----LMPSRGLANHGQTRHM 615


>BC142941-1|AAI42942.1|  715|Homo sapiens metastasis associated 1
           protein.
          Length = 715

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 138 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHM 251
           KR++ +  G+D  +++R     LMP+ G  ++ +TRHM
Sbjct: 582 KRSYEQHNGVDGNMKKRL----LMPSRGLANHGQTRHM 615


>BC009443-1|AAH09443.2|  263|Homo sapiens MTA1 protein protein.
          Length = 263

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 138 KRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHM 251
           KR++ +  G+D  +++R     LMP+ G  ++ +TRHM
Sbjct: 130 KRSYEQHNGVDGNMKKRL----LMPSRGLANHGQTRHM 163


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,493,443
Number of Sequences: 237096
Number of extensions: 1254243
Number of successful extensions: 3408
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3408
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4042952858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)