Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30617
(467 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 87 8e-18
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr... 30 0.95
AF100663-3|AAC68980.1| 529|Caenorhabditis elegans Udp-glucurono... 28 2.9
Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical pr... 27 5.1
U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein. 27 5.1
U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical pr... 27 5.1
U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z75712-8|CAB00047.1| 319|Caenorhabditis elegans Hypothetical pr... 27 8.9
Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 86.6 bits (205), Expect = 8e-18
Identities = 39/65 (60%), Positives = 55/65 (84%)
Frame = +2
Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
PNG++KVLV NVK+L++L+MQ+ KY EI HGVS+K RK IVER+ QL+I++TN ARLR
Sbjct: 70 PNGYKKVLVQNVKDLDMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLR 129
Query: 434 SQEND 448
++E++
Sbjct: 130 TEESE 134
Score = 83.8 bits (198), Expect = 6e-17
Identities = 34/59 (57%), Positives = 48/59 (81%)
Frame = +3
Query: 78 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHML 254
+VKK+ +F RH+SDRY ++ +WRKP+GIDNRVRRRF+G MP IG+GS+++TR +L
Sbjct: 11 VVKKKLTKFKRHESDRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVL 69
>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
K07G5.3 protein.
Length = 1202
Score = 29.9 bits (64), Expect = 0.95
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -1
Query: 191 ESPADSVVN-TSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVCXFKKRD-- 21
E P +S+ T R++ +P +++ +R+ ++ ++ FD+ R HLV + R+
Sbjct: 1058 EEPLESIQTATVRYSKLPEDWIVELRISLEREIKIRFDESRKHAIPQWHLVAARQLREIL 1117
Query: 20 SEPRG 6
PRG
Sbjct: 1118 ENPRG 1122
>AF100663-3|AAC68980.1| 529|Caenorhabditis elegans
Udp-glucuronosyltransferase protein20 protein.
Length = 529
Score = 28.3 bits (60), Expect = 2.9
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = -1
Query: 335 LRSTSCFASSRFPAL*HCELGPYGIHLEHMTGLLVGTVTDVGHQVLTLESPADSVVNTS 159
L S CFASS + L + L + H++ + G T+TD GH V L D + TS
Sbjct: 7 LFSAICFASS-YKILFYTNLFGHS-HVKFL-GAAADTLTDAGHNVTVLIPVFDKALKTS 62
>Z68003-1|CAA91975.1| 664|Caenorhabditis elegans Hypothetical
protein E02H4.1 protein.
Length = 664
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 347 RERSLRSTSCFASSRFPAL*HCELGPYGIHLEHMTGLLVGTVTDVGHQVLTLESPA 180
+E+ + F S+ FPA+ C L P+ HL + T+ D HQ + + A
Sbjct: 95 KEKIVNVELVFESAPFPAITVCNLNPFKNHLARSVPEISETL-DAFHQAVVYSNDA 149
>U76403-1|AAB39735.1| 664|Caenorhabditis elegans degenerin protein.
Length = 664
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 347 RERSLRSTSCFASSRFPAL*HCELGPYGIHLEHMTGLLVGTVTDVGHQVLTLESPA 180
+E+ + F S+ FPA+ C L P+ HL + T+ D HQ + + A
Sbjct: 95 KEKIVNVELVFESAPFPAITVCNLNPFKNHLARSVPEISETL-DAFHQAVVYSNDA 149
>U39645-5|AAU05591.1| 345|Caenorhabditis elegans Hypothetical
protein C14F11.4a protein.
Length = 345
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 239
Y P + KK +RFI ++R+D + RN P R + + Q L+ + Y S+ +
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60
Query: 240 TRHML 254
+ L
Sbjct: 61 AEYQL 65
>U39645-4|AAU05592.1| 341|Caenorhabditis elegans Hypothetical
protein C14F11.4b protein.
Length = 341
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 YRPTIVKKRT--KRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKK 239
Y P + KK +RFI ++R+D + RN P R + + Q L+ + Y S+ +
Sbjct: 4 YPPLVTKKEIIYRRFIDDHNERFDNIVRN---PTSYPPRAPKPERPQNLVVSHNYHSDVE 60
Query: 240 TRHML 254
+ L
Sbjct: 61 AEYQL 65
>Z75712-8|CAB00047.1| 319|Caenorhabditis elegans Hypothetical
protein K04G2.10 protein.
Length = 319
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 44 QDGYKTCLQADNRQKEDEEIYQASIGSL*QT*EEL 148
QD K + D+RQKE E Y+ IGS+ + E++
Sbjct: 238 QDMVKYMEENDDRQKESIEKYKRKIGSMKKVIEKM 272
>Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical
protein R04F11.3 protein.
Length = 385
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 373 DRGKIPAAQHQSDESSRSPPVPGERLN 453
D + P+++ QS E +SPP +R+N
Sbjct: 247 DSDEFPSSREQSVEKEKSPPAKRKRVN 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,242,634
Number of Sequences: 27780
Number of extensions: 202478
Number of successful extensions: 667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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