Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30617
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   149   2e-38
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.7  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  149 bits (360), Expect = 2e-38
 Identities = 66/69 (95%), Positives = 68/69 (98%)
 Frame = +3

Query: 48  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 228 SNKKTRHML 254
           SNKKTRHML
Sbjct: 61  SNKKTRHML 69



 Score =  114 bits (275), Expect = 4e-28
 Identities = 55/65 (84%), Positives = 60/65 (92%)
 Frame = +2

Query: 254 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLR 433
           P GFRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK IVER+QQLSIRVT  +ARLR
Sbjct: 70  PTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLR 129

Query: 434 SQEND 448
           SQEN+
Sbjct: 130 SQENE 134


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 179 PQAIQGSILDAQHRLRFQQED 241
           P+    S LD +HR+ + +ED
Sbjct: 182 PRDYTASDLDVEHRVAYWRED 202


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 325  LPVLHHQDFQLFNI 284
            LP L H D Q FN+
Sbjct: 1031 LPELRHGDIQGFNV 1044


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 325  LPVLHHQDFQLFNI 284
            LP L H D Q FN+
Sbjct: 1027 LPELRHGDIQGFNV 1040


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,518
Number of Sequences: 438
Number of extensions: 2463
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)