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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30617
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo...   100   4e-22
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)            98   3e-21
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)            98   3e-21
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain...    27   4.8  
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot...    27   4.8  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    27   6.3  
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ...    27   6.3  

>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
           ribosomal protein L32, human, PIR1:R5HU32
          Length = 133

 Score =  100 bits (240), Expect = 4e-22
 Identities = 46/67 (68%), Positives = 54/67 (80%)
 Frame = +2

Query: 248 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAAR 427
           Y PNGF+K +VHN  ELE+LMM NR YCAEIAH VS+KKRK IVER+ QL + VTN  AR
Sbjct: 67  YLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLAR 126

Query: 428 LRSQEND 448
           LRSQE++
Sbjct: 127 LRSQEDE 133



 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 42/69 (60%), Positives = 55/69 (79%)
 Frame = +3

Query: 48  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 228 SNKKTRHML 254
           S+KKTRH L
Sbjct: 60  SDKKTRHYL 68


>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 43/67 (64%), Positives = 53/67 (79%)
 Frame = +2

Query: 248 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAAR 427
           Y PNGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVER+ QL + V+N   R
Sbjct: 67  YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126

Query: 428 LRSQEND 448
           LRSQE++
Sbjct: 127 LRSQEDE 133



 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 42/69 (60%), Positives = 55/69 (79%)
 Frame = +3

Query: 48  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 228 SNKKTRHML 254
           S+KKTRH L
Sbjct: 60  SDKKTRHYL 68


>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
          Length = 133

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 43/67 (64%), Positives = 53/67 (79%)
 Frame = +2

Query: 248 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAAR 427
           Y PNGF+K +VHN  ELE+LMM NR YCAEIAH +S+KKRK IVER+ QL + V+N   R
Sbjct: 67  YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126

Query: 428 LRSQEND 448
           LRSQE++
Sbjct: 127 LRSQEDE 133



 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 42/69 (60%), Positives = 55/69 (79%)
 Frame = +3

Query: 48  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227
           MA+ P+    +VKKR+ +FIR QSDR   +K +WR+P+GID+RVRR+FKG  LMPN+GYG
Sbjct: 1   MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59

Query: 228 SNKKTRHML 254
           S+KKTRH L
Sbjct: 60  SDKKTRHYL 68


>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
           protein similar to PF02225: PA domain; similar to
           N-acetylated-alpha-linked acidic dipeptidase II
           (NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
           Glutamate carboxypeptidase II (Membrane glutamate
           carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
           acidic dipeptidase I) (NAALADase I)
           (Pteroylpoly-gamma-glutamate
           carboxypeptidase)(Folylpoly-gamma-glutamate
           carboxypeptidase) (FGCP) (Folate hydrolase 1)
           (Prostate-specific membrane antigen homolog) (SP|O77564)
           {Sus scrofa}
          Length = 280

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 51  AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 161
           A+ P     ++ + +K +++H + R DKL++   KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230


>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
           similar to Anther-specific proline-rich proteins
           SP|P40603 SP|P40602 from {Arabidopsis thaliana};
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 385

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 105 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 233
           +R Q D Y K++R WR   G +   +R  +  YL   I  GSN
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSN 185


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
            PF04931: DNA polymerase V
          Length = 1306

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 269  KVLVHNVKELEILMMQNRKYCAEIAHGVSSKK 364
            K LV N+ E ++   Q RK+C  I   VSS K
Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLK 1273


>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain);
          Length = 211

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 260 GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLRSQ 439
           G +K +V  VK++E+L + NRK   +     S K+   I  + ++    V    A+L   
Sbjct: 90  GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149

Query: 440 E 442
           E
Sbjct: 150 E 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,744,103
Number of Sequences: 28952
Number of extensions: 191336
Number of successful extensions: 613
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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