BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30617 (467 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 100 4e-22 At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 98 3e-21 At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 98 3e-21 At4g07670.1 68417.m01203 protease-associated (PA) domain-contain... 27 4.8 At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot... 27 4.8 At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 27 6.3 At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ... 27 6.3 >At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribosomal protein L32, human, PIR1:R5HU32 Length = 133 Score = 100 bits (240), Expect = 4e-22 Identities = 46/67 (68%), Positives = 54/67 (80%) Frame = +2 Query: 248 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAAR 427 Y PNGF+K +VHN ELE+LMM NR YCAEIAH VS+KKRK IVER+ QL + VTN AR Sbjct: 67 YLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLAR 126 Query: 428 LRSQEND 448 LRSQE++ Sbjct: 127 LRSQEDE 133 Score = 93.1 bits (221), Expect = 9e-20 Identities = 42/69 (60%), Positives = 55/69 (79%) Frame = +3 Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227 MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59 Query: 228 SNKKTRHML 254 S+KKTRH L Sbjct: 60 SDKKTRHYL 68 >At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) Length = 133 Score = 97.9 bits (233), Expect = 3e-21 Identities = 43/67 (64%), Positives = 53/67 (79%) Frame = +2 Query: 248 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAAR 427 Y PNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVER+ QL + V+N R Sbjct: 67 YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126 Query: 428 LRSQEND 448 LRSQE++ Sbjct: 127 LRSQEDE 133 Score = 93.1 bits (221), Expect = 9e-20 Identities = 42/69 (60%), Positives = 55/69 (79%) Frame = +3 Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227 MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59 Query: 228 SNKKTRHML 254 S+KKTRH L Sbjct: 60 SDKKTRHYL 68 >At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) Length = 133 Score = 97.9 bits (233), Expect = 3e-21 Identities = 43/67 (64%), Positives = 53/67 (79%) Frame = +2 Query: 248 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAAR 427 Y PNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVER+ QL + V+N R Sbjct: 67 YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126 Query: 428 LRSQEND 448 LRSQE++ Sbjct: 127 LRSQEDE 133 Score = 93.1 bits (221), Expect = 9e-20 Identities = 42/69 (60%), Positives = 55/69 (79%) Frame = +3 Query: 48 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 227 MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59 Query: 228 SNKKTRHML 254 S+KKTRH L Sbjct: 60 SDKKTRHYL 68 >At4g07670.1 68417.m01203 protease-associated (PA) domain-containing protein similar to PF02225: PA domain; similar to N-acetylated-alpha-linked acidic dipeptidase II (NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to Glutamate carboxypeptidase II (Membrane glutamate carboxypeptidase) (mGCP) (N-acetylated-alpha-linked acidic dipeptidase I) (NAALADase I) (Pteroylpoly-gamma-glutamate carboxypeptidase)(Folylpoly-gamma-glutamate carboxypeptidase) (FGCP) (Folate hydrolase 1) (Prostate-specific membrane antigen homolog) (SP|O77564) {Sus scrofa} Length = 280 Score = 27.5 bits (58), Expect = 4.8 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +3 Query: 51 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 161 A+ P ++ + +K +++H + R DKL++ KPR Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230 >At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein similar to Anther-specific proline-rich proteins SP|P40603 SP|P40602 from {Arabidopsis thaliana}; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase Length = 385 Score = 27.5 bits (58), Expect = 4.8 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = +3 Query: 105 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 233 +R Q D Y K++R WR G + +R + YL I GSN Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYL---ISIGSN 185 >At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain PF04931: DNA polymerase V Length = 1306 Score = 27.1 bits (57), Expect = 6.3 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 Query: 269 KVLVHNVKELEILMMQNRKYCAEIAHGVSSKK 364 K LV N+ E ++ Q RK+C I VSS K Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLK 1273 >At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam profile PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain); Length = 211 Score = 27.1 bits (57), Expect = 6.3 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +2 Query: 260 GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERSQQLSIRVTNPAARLRSQ 439 G +K +V VK++E+L + NRK + S K+ I + ++ V A+L Sbjct: 90 GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149 Query: 440 E 442 E Sbjct: 150 E 150 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,744,103 Number of Sequences: 28952 Number of extensions: 191336 Number of successful extensions: 613 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 596 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 613 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 791932800 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -