Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30616
         (747 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O77363 Cluster: Putative uncharacterized protein MAL3P4...    35   1.8  
UniRef50_A0RP53 Cluster: Mur ligase family protein; n=6; Campylo...    34   4.3  

>UniRef50_O77363 Cluster: Putative uncharacterized protein
           MAL3P4.29; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein MAL3P4.29 - Plasmodium
           falciparum (isolate 3D7)
          Length = 346

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 24/70 (34%), Positives = 37/70 (52%)
 Frame = -2

Query: 413 IQIYLDLYKAVINLFTEINLLSICLRRNI*SFEFEKKKMNSCRTHSWLNYITGLKFSKAR 234
           I  YL+ YK   N F+E ++L+ C+ +NI SF  E+KK N+ +     NYI    F  + 
Sbjct: 264 ISNYLNNYK---NNFSENDILNSCINKNIESFIQEEKK-NNKKNKINKNYINQSMFLNSL 319

Query: 233 QATYLDKVHK 204
              +  K+ K
Sbjct: 320 HPNFSQKIFK 329


>UniRef50_A0RP53 Cluster: Mur ligase family protein; n=6;
           Campylobacter|Rep: Mur ligase family protein -
           Campylobacter fetus subsp. fetus (strain 82-40)
          Length = 478

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -3

Query: 445 FLYIFKICGLKFRFILTCTRQLSICLRRSICYQFVYGEIFKALNLKKKR*TLVEHIHGLI 266
           FL IF +  L F+F      QL   +  ++C+ F+Y E   AL  KK+    + +I  L 
Sbjct: 100 FLLIFFVVSLFFKFEQIAVLQLIFSVGFALCFSFIY-EYILALKFKKEAKNKINNISNLK 158

Query: 265 IL 260
           I+
Sbjct: 159 IV 160


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,401,522
Number of Sequences: 1657284
Number of extensions: 11977611
Number of successful extensions: 21507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21506
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)